Streptomyces rapamycinicus: M271_16280
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Entry
M271_16280 CDS
T02907
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
src
Streptomyces rapamycinicus
Pathway
src03030
DNA replication
src03410
Base excision repair
src03420
Nucleotide excision repair
src03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
src00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M271_16280
03410 Base excision repair
M271_16280
03420 Nucleotide excision repair
M271_16280
03430 Mismatch repair
M271_16280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
src03032
]
M271_16280
03400 DNA repair and recombination proteins [BR:
src03400
]
M271_16280
Enzymes [BR:
src01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M271_16280
DNA replication proteins [BR:
src03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M271_16280
DNA repair and recombination proteins [BR:
src03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M271_16280
NER (nucleotide excision repair)
GGR (global genome repair) factors
M271_16280
MMR (mismatch excision repair)
DNA ligase
M271_16280
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M271_16280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
MutL
Motif
Other DBs
NCBI-ProteinID:
AGP54823
UniProt:
A0A0A0NFH4
LinkDB
All DBs
Position
complement(4193406..4195628)
Genome browser
AA seq
740 aa
AA seq
DB search
MAGEQQSKVPAEVRERHARLAEQIEEHRFRYYVKDAPVVSDAEFDKLMRELEALEEEHPT
LRTPDSPTQKVAGAYETEFTEVAHRERMLSLDNAFDDDELATWADRIAKELGSGSYHFLC
ELKVDGLAVNLTYEQGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRG
EVFLPRERFEELNARLVEAGKPPFANPRNAAAGSLRQKDPKITASRPLDMVVHGIGAREG
FDIDRLSQAYELLHEWGLPTAAHFSVVDSIEGVREYIAYYGESEHRHSVEHEIDGAVVKL
DEIPLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGS
EVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAACPEC
DTPLQPAKEGDVDLRCPNGRSCPAQLRERIFYLAGRKSLDIENLGYVAAAALTQPLEPAE
PPLKDEGDLFDLKIEQLLPIRSHVLDPDSGLPKRDPETGEEKVVTFFATQKGEAKKNALA
MLANIEAAKERPLARIITGLSIRHVGPVAATALAREFRSLDRIAEADEEELAAVEGVGPT
IAASLKEWFAVDWHRQIVEKWRRAGVRLEEEGGEDEGPRPLGGLTVVVTGTLQSYTRDGA
KEALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQVKVPVLDEDGFRVLLEQGPDAAR
EVALTPPEESGEEAGEESAE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcagtcgaaggtccccgccgaagtgcgggagaggcacgccaggctc
gctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgcgccggtcgtcagt
gacgccgagttcgacaagctcatgcgcgagctggaggcactggaggaggagcatcccacg
ctccgtacgcccgattcgccgacccagaaggtcgcgggggcgtacgagacggagttcacc
gaggtcgcgcaccgagagcggatgctcagcctggacaacgccttcgacgacgacgagctg
gccacctgggcggaccgcatcgccaaggagctgggcagcggttcgtaccacttcctgtgc
gagctgaaggtggacggcctcgcggtcaacctcacctatgagcaagggcggctgacccgc
gccgcgacccgtggcgacggccgtaccggcgaggacatcacgcccaatgtgcggacgatt
gccaagatccccaaccggctgacgggcgaccgcgtcccggcgctggtggaggtgcgcggc
gaagtcttcctgccccgcgagcggttcgaggagctgaacgcccggctggtggaggcgggc
aagccgcccttcgccaacccccggaacgcggcggcgggttcgctgcgccagaaggacccg
aagatcaccgcgtcccggccgctggacatggtggtgcacggcatcggggcgcgcgagggc
ttcgacatcgaccggctgtcgcaggcgtacgagctgctgcacgagtgggggttgcccacc
gccgcccacttctcggtggtggactcgatcgagggcgtgcgcgagtacatcgcgtactac
ggcgagagcgagcaccggcactcggtggagcacgagatcgacggcgcggtcgtcaagctg
gacgagatcccgctgcaggggcggctcggctccacctcgcgggcgccgcgctgggcgatc
gcctggaagttcccgcccgaggaggtcaacaccaagctggtggacatccgggtgggcgtg
gggcgcacggggcgggtgacgccttatgcggtggtcgagccgatcacggtcgcgggttcg
gaggtcgaattcgcgacgctgcacaaccaggacgtggtcaaggccaaaggcgtgctgatc
ggcgacaccgtggtgctccgcaaagcgggtgatgtcattccggaaatcctgggcccggtc
gtcgatctgcgggacggcagcgagcgggaattcgtgatgccggccgcctgccccgagtgc
gatacgccgctgcagcccgccaaggagggcgatgtcgatctgcggtgtcccaacggccgg
tcctgcccggcgcagctgcgcgagcggattttctatctcgccgggcggaaatccctggac
atcgagaacctcggctatgtcgccgccgccgccctcacccagccgctggaacccgcggaa
ccgccgctgaaggacgagggcgatctgttcgacctgaagatcgaacaactgctgcccatt
cggtcgcatgtactggacccggacagcggactgcccaagcgtgatccggagaccggtgag
gagaaggtggtcaccttcttcgccacccagaagggcgaggcgaagaagaacgccctggcg
atgctggccaatatcgaggcggccaaggagcgcccgctggcccggatcatcaccggcctt
tcgatccgtcatgtcggccccgtggccgccaccgcgctggcccgggaattccgctcgctg
gaccggatcgccgaggcggacgaggaggagctggcggccgtggagggggtcgggccgacc
atcgccgcctcgctcaaggagtggttcgcggtcgactggcaccgccagatcgtcgagaaa
tggcggcgtgccggggtccggctggaggaggagggcggcgaggacgaagggccacgtccg
ctggggggcctcaccgtcgtcgtcaccggaacgctgcagtcgtacaccagggatggggcc
aaggaggccctgcagagccgtggtgccaaagtcaccggatcggtttcgaaaaagaccgat
ttcgtcgtcgtcggcgataatccgggctcgaagtatgacaaggccatgcaggtgaaggtt
cccgtgctcgatgaggacggatttcgcgtcctgctcgaacaggggcccgacgcggcgaga
gaggtcgcgttgacgcccccggaagagtccggggaagaggccggggaagagtccgcggag
tag
DBGET
integrated database retrieval system
