Salpingoeca rosetta: PTSG_05019
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Entry
PTSG_05019 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sre
Salpingoeca rosetta
Pathway
sre03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PTSG_05019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sre03400
]
PTSG_05019
Enzymes [BR:
sre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PTSG_05019
DNA repair and recombination proteins [BR:
sre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PTSG_05019
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
BRCT_2
BRCT
mRNA_cap_enzyme
New_glue
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
16074914
NCBI-ProteinID:
XP_004994335
UniProt:
F2U9A1
LinkDB
All DBs
Position
Unknown
AA seq
660 aa
AA seq
DB search
MVGFDRESKSVIVKGDNFDVKALGRPGVTRDRYPTAIQCYIVFDLVLLNGEPWYDRPLRE
RKEMLARIITPDNERIILADYKIGRSNDDFLKFANAAIDEREEGVMIKDLDSKYLLGRRD
KAWMKWKPEYVDTLADDLDLLVVGGYHGEGTRRSGGISHFLLAVAEPPQPGEKPTMFNTF
CKVGTGYSLKQLREIQARLRPHWKTFNTDPRNMSMSRKVRLAMPGFKEKPDVWIEPEESI
IVQVKAAEICPTEKFAARFTLRFPRLQRFRLDKNWWECMLQTELMPLYDRASGKIAHRAL
EDHHFNADNGKLKAKRAKRTTASFRVAEHFKAADLSDIKEKSKIFSGLRLRVIGIDRITR
RVMSKQDIERKIKEFGGTPVQRYEEGVLPVSDMENITVRALPQDIDIVKTSWVLDCCRLG
LRLAFNPKYLLRTSTATAEALKEQVDAFGDSYEEDLTEEDFDEMLARLTDKQHTTHPAFP
LLSHTELAEVEVEYTTGLQPLRLARVFLDMDKGPAGEYSTVRKTGLEVLFLGGQVMDKLD
RTCTHVLVDEQGDLSRVAEYDSLFRDWPQRPKVVGCAWVKECVKLNREVDEAGFMVKAPR
ASGSTSPESSTTATTAAPTAAQAGATTTSSSASSSSSSTRPAPLVRRRSISAASVRADLQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggtcgggtttgatcgcgagtcgaaatcggtcattgtgaaaggcgacaacttcgatgtc
aaggcccttggccgcccaggcgtcacgcgcgacagatacccaacggcgatccagtgctac
atcgtgtttgacctcgtgctgctcaacggagagccctggtacgaccggcccttgagggag
cgcaaggaaatgcttgcacgcatcatcaccccagacaacgaacgcatcatcctggcagac
tataagattgggcgcagcaacgatgatttcctcaagtttgcaaacgctgccattgacgag
cgggaggaaggtgtgatgatcaaggatctcgactcaaagtatctgctgggccgtcgcgat
aaggcctggatgaagtggaagcccgaatatgtcgacaccctcgcagatgacctcgacctc
ctcgttgttggcggataccacggggagggcacacgtcgctcgggcggcatttcgcatttc
ctcctcgctgtcgctgagccgccgcagccaggcgagaaaccaaccatgttcaacacgttt
tgcaaggttgggactggctattctctgaaacagctgcgggagatccaggcgcggttacgc
ccgcactggaaaacattcaacacagatccccgaaatatgtccatgtcaagaaaggtgcgg
ctggccatgcccggtttcaaggagaagcccgacgtgtggattgagcctgaagagtcgatt
atcgtgcaggtgaaggcggctgagatctgcccaacggaaaagtttgctgcacgcttcacc
ctccgcttcccccgtctccagcggtttcgtctcgacaagaattggtgggagtgcatgctg
cagacagagctgatgccactgtatgatcgggcaagtgggaaaattgcccaccgcgccctg
gaggaccaccacttcaacgcggacaacgggaaactgaaggctaaacgcgcaaaacgcacc
accgcctcgtttagggttgcagagcatttcaaggcagccgacctctcagatatcaaagag
aaatcgaagatcttcagtggcctgcgcctccgcgtgattggcattgatcgcatcacccgc
cgcgtcatgtccaaacaggacattgagaggaaaatcaaggagtttggcggcacaccggtg
cagcggtacgaggagggtgtgctgccggtctctgatatggagaacatcacggtccgcgct
ctcccgcaagacatcgacattgtcaagacgagctgggtgcttgactgctgtcggctgggg
ctgcgtcttgccttcaacccgaaatatcttctgcgaacgagcacagcaacagcagaggcc
ctgaaggaacaagtcgacgcatttggtgattcgtacgaagaggatttgacggaggaagac
tttgatgagatgcttgcgcgtctcacagacaagcagcacaccacacacccggccttccct
ctgctgtcgcacacggagcttgcggaggtggaggttgaatacaccacgggcctgcagccg
ctgcggcttgctcgcgtgttcttggacatggacaagggacccgctggcgaatactccaca
gtccgcaagacgggcctggaggtgctgttccttggcgggcaggtgatggacaagcttgat
cgcacgtgcacgcatgtccttgtcgatgagcagggtgacctgagccgcgttgcggagtac
gacagcctgtttcgtgactggccacagcgacccaaggttgttggatgtgcgtgggtcaag
gagtgtgtcaagttgaacagagaggtggatgaggcgggcttcatggtcaaggcgccacga
gcctcgggatcaacttcaccggaatcgtcaaccactgctacaactgcagcaccaacagca
gcccaggccggcgccaccaccacttcttcttccgcgtcttcctcttcctcctccactcgc
cctgctcccttggttcgccggcggagcatttctgctgccagcgttcgcgcagacctgcag
tga
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