Salpingoeca rosetta: PTSG_05477
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Entry
PTSG_05477 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K14314
nuclear pore complex protein Nup210
Organism
sre
Salpingoeca rosetta
Pathway
sre03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PTSG_05477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_05477
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
PTSG_05477
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_NUP210_2nd
Ig_NUP210_7th
Ig_NUP210_1st
Big_2
Ig_NUP210_4th
Ig_NUP210_9th
Ig_NUP210_3rd
Ig_NUP210_6th
NUP210_Ig
T2SS-T3SS_pil_N
Motif
Other DBs
NCBI-GeneID:
16073923
NCBI-ProteinID:
XP_004993346
UniProt:
F2UBB7
LinkDB
All DBs
Position
Unknown
AA seq
1854 aa
AA seq
DB search
MRFAPLAAVVLVALLAAVTTSVAALHQYRLSDPRLLLPYPTKSAVVQHNISATGGCFVWS
TTRPHVISVTTPSQKCSTWATVEVIARPGPRMSADIIAREVSSDQKLFCEVTVAQLHDVL
LETTDHTMYLGDPPLKITVSAQDSEENTFSALSSLPFTWKILDATCKPSSSASSRLRFVT
FNEVKYDARPEITALESQGLRGYEVLVQPSHSGRVCVLVSFQSNDYIVEAKAIVAIVERI
NINPPDMYTVAGETSSFAITTQQGQHISLKSGKYSLQSENTSVAEVVPGTSRVKSLAHGV
AKLYIRDKDGLMDASTGANAFVHVVEPTKLRISIRSCNDDLLETPCVLLVNTDYTTTLIL
TDDSNNHIHTDELVFSLSSNAPAVALKDSTTNNTWHRAHTAVVGTADLSAAYFGPDTTAG
AASGTPVLTAQRVVRVVDPIVVTPDRVVIPWSDESSNPVSIQLKATGGSGSYLWSSDASR
VAHVSEGRVVPVGFGAATIAAYDRLQSEIAGYASVDVVYPSALRFVPGPRDAAIGSDITL
HVEFLDDEGNVFDRCSHLVPTWSLSSAAFVKRDTKCGDARCACIVLRASQPERATITVTW
DKLSATADLSAHRRLAIHPDDKDVLVSPGAAHTIRFTGGPRPFPPLLSLHTRDLVPASED
AVGVSGQGDAATTAFTVTCVKTGCQTLTVRVGNQPSSAHPYFGVMEEDTAQFCCERPSHV
VARLDFDLEDVAENPACSHQDSVYLVLAGKECPVYVQPFFNSRTYNNASTIEYSWTNTAS
DMAIAPTTAHTAVTPSGSARAKVQVSTKGHRDQRVSSHLFLEPRPAITTSPARVVLADVR
DARVSVPVVGGSGVFKVHNTTRVVAARVANTTLVVDGKAKGSGKLKVEDECLLPRTVSTQ
VAVEVVPAHHFTANIQNKLQVGASTTAELCLFDKQGRSMPASAYPLVVFAEEEDDTHVQL
RPIGPADTTSNTGRGGNGGCGGWLFQVEGVETGLAKVRFSAAIQPLHGAAYTLSSGNYTI
EVFDALRLSPRRLLLLPGSCFQVEVQNKPTYGHVSVRFHTDNSNYASVSTHGLVCGRTVG
ETSLTATVFGEDPTVALSTDTVLVKVVLATGLHIRFPSRYMVVGSVVEAYATLRHGDEDI
LSGQSIASMTWTSDDPTVLSTHSLFRHEGEDTEEFYAAAVAHAEGVVRVTVSAPCASAYC
RAPSSTIAASFDLTVFSRLRLPAGPDFIVPTSARFQLPVSFSHKRDVQYELFAASPAPSG
PVRSTIAPDGTITTADEREDVVVAVMHVVDGVVLQRAAASLHVDRVRHLSLEPEPSCHHL
TLGSHCIIRVVLQDMTGRPLVYTDGIDVQAFVDKSVARVRMHSSNELIVTATGKGEALLR
VSVHNSPVSNYFRVLVTSQLNPSDVTVPVGSSFCFPPSEASRNATWASSSPAVATVKPPG
HVTIHSEGETEISRTTAQGIAKGSLRSRPIAAARFVAQPAFITNLEASNAFSLRLSYHSR
SGANFSLIPACQGKGFQPMAKVTCAAEGHPHLSVAPAFDAASGKHACQITVSSNDVLSAS
PLVVTATVSPLATSSSSSSSTAVVARTAVTAAPAFHVESSVVSLGSRLASAATLRVRQVL
DLSQLGVEVDSNSLLPDAGSTSDRQYFTSASLRITFVMQAQAEAVVTVERMIASAREHTL
VVFNKYTQQRHAVSVAVLDEPEPEAPPTRAPPAATSDQHGVITMDQSTGAAPSTPSPPDN
SWPLWVYVVLFFLFCIILLLVLHLPSIPPRDPNQSLYVGPQSPQRGAFSRFGSPLQLVSR
IPRTSAMTRATPTKLGKTTTAAPATTTAGAGVVRPTMTTPTRDRRLQARSSRFS
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcgcgccactggcagccgtcgtgctggtggcactgctggctgcggtcaccacg
agcgttgccgctttgcaccagtaccgcctgtcagacccacgcctcctccttccttacccc
accaagtccgccgtcgtccagcacaacatctccgccacaggcggctgcttcgtctggagc
accaccaggcctcacgtcatctccgtgaccacgccatcccagaaatgtagcacgtgggcc
actgtggaggtgattgctcggcctgggcctcgcatgtcggccgatatcattgcccgcgaa
gtctcctcggatcagaagctgttttgtgaagtgaccgtggcccagttgcacgatgtgctg
ctggagacaacggaccacaccatgtatcttggtgacccaccactcaagatcaccgtctct
gcacaggacagcgaagagaacacgttctcggcgctgtcgtcgctgccattcacgtggaag
attctcgatgccacgtgcaagccgagctcgtctgcatcctccaggctgcggtttgtcacc
ttcaacgaagtcaagtacgacgcccggccagagatcaccgccctcgagtcgcagggtctt
cgcgggtatgaagtgctggtgcagccctcccactccggtcgcgtctgtgtcctcgtctcc
ttccagagcaacgattatattgttgaggcgaaagcgattgtggcgattgtggagcgcatc
aacataaacccgcccgacatgtatacggtggctggcgagacgtcgtcgtttgccatcaca
acgcagcagggtcagcacatcagcctcaagtctggcaaatactcgctccagtccgaaaac
acctcggttgcagaggttgttcccggcacgtcgcgggtcaagtccctggcgcacggcgtc
gccaagctgtacatccgtgataaggacgggctgatggatgcgtcgacgggtgcgaatgcg
tttgtgcatgttgttgagccgacgaaactgcgcatctccatccgctcgtgcaacgatgac
cttctggagacgccgtgcgtgctgctggtcaacacggactacacaaccacgctcatcctc
accgatgactcaaacaaccacatccacacggacgagcttgtgttttcgctgtcgtccaat
gcccctgccgtggcgctcaaggactcaacgaccaacaacacgtggcaccgcgcccacact
gctgtcgtcggcaccgcggacctctctgccgcatattttgggccggacaccaccgccggc
gctgccagtggcacacctgtcctcactgcacagcgcgttgtgcgggttgttgatccgatt
gttgtgacgcccgatcgcgtggttatcccgtggagtgacgagtcaagcaaccctgtctcc
atccaactcaaggcgacaggcgggtctggctcgtacctgtggagctccgatgcgagccgc
gttgcgcacgtgtctgagggccgcgttgtccccgttggctttggcgccgccaccattgcc
gcttacgaccgcctgcagtctgagattgccgggtatgcgagcgtggacgtggtgtacccg
tcggcgctgcgctttgtcccgggcccgcgcgacgccgccattggcagcgacatcaccttg
cacgtggagtttcttgacgacgaaggaaacgtgtttgaccgctgcagccacctcgtcccc
acctggtccctctcctccgccgcctttgtcaagcgggacaccaagtgcggggatgcccga
tgcgcgtgcatcgtcctgcgcgcgtcccagcccgagcgggccaccatcactgtcacgtgg
gacaagctctctgccaccgcggacctcagcgcccaccgtcgcctggccatccacccggat
gacaaggacgtgcttgtgtcgcctggcgctgcgcacaccatccgcttcaccggcggcccg
cggcccttccccccgctcctctccctccacacccgtgacctcgtccccgccagcgaggat
gccgtgggtgttagcgggcagggcgacgcagccacaaccgccttcaccgtgacgtgcgtc
aagacggggtgtcagacgctgacggtgcgtgttggcaaccagcccagctcggcacatccg
tactttggcgtgatggaggaggacacagcgcagttttgctgcgagcggccgtcacacgtc
gtcgcacgtctcgactttgacctggaggacgttgcagagaacccagcgtgctcgcaccag
gactcggtgtacttggtgcttgcaggcaaggagtgccccgtgtatgtgcagccgtttttc
aactcgcgcacgtacaacaacgccagcacaattgagtactcgtggactaacacggcctcg
gatatggccatcgctccaacaacggcacacaccgcagtcaccccatcaggctctgcgcgt
gcaaaggtgcaagtgtcgaccaaaggccaccgcgaccagcgggtatccagccacctgttc
cttgagccgcgcccggccatcaccacctcccctgcacgcgttgtcctcgccgatgtgcgc
gatgctcgcgtgtctgtgcccgttgtaggcggatcgggcgtgttcaaggtgcacaacacc
acgcgcgttgtggctgcccgcgttgccaacacgacgctggttgtggacggcaaggccaag
ggcagcggcaagctaaaggttgaggatgagtgcctgctgcctcgcacggtgtccacgcag
gttgcggtggaggttgtgcccgcccaccactttacggccaacatccagaacaagcttcaa
gtcggcgcctccaccacagcggagctgtgcctgtttgacaagcagggccggagcatgcct
gcaagcgcctacccgctcgttgtgtttgcagaggaggaagacgatacgcacgtgcagctg
cggcccattggccccgcagacacaaccagcaacaccgggcgtggcggcaacggcggctgt
ggtggctggctgttccaggtggagggtgttgagacgggcctggcaaaggtgcggttctcc
gcagccatccaaccactgcacggcgcagcgtacacgctctcgtctggcaactacaccatt
gaggtttttgatgcgctccgcctgtccccacgccgtcttctgctcctcccaggctcctgc
ttccaggttgaggtgcagaacaagccgacatatgggcatgtgtctgtgcgcttccacacc
gacaacagcaactacgccagcgtgtcgacgcacgggcttgtgtgcgggcgcactgttggt
gagacgtcgctcacagccaccgtttttggggaagacccaacggttgccctgagcacggac
acggtgctggtgaaggttgttcttgcaacgggtctgcacattcgctttccgtcgcggtac
atggtggtcggcagtgtcgtcgaggcgtatgcgacgctgcgacacggcgacgaggacatt
ttgagcgggcagtccattgccagcatgacctggacctccgatgaccccactgtcctcagc
acacactccctcttccgacacgagggcgaggacactgaggagttttacgcggctgcagtt
gcccatgctgagggtgttgttcgcgtgacagtgtctgcaccgtgcgcgtcggcttactgc
cgtgcaccctcgtccaccatcgccgcttcgtttgacctcactgtcttctcccgcctccgt
ctccctgccggcccagatttcatcgtcccaacgtctgcacgcttccagctgccggtgtcc
ttctcccacaagcgggatgtgcagtatgagctgtttgctgcgtcgcctgcgccctccggc
cccgtgcgctccaccattgcccccgacggcactatcaccaccgcagacgagcgggaggat
gttgttgttgccgtcatgcacgttgttgacggggtggtgctgcagcgtgccgccgccagt
ctgcacgttgaccgcgtgcgccacttgtcgctggagcccgagccaagctgccaccacctc
accctcggctcacactgcatcatccgtgttgtgctgcaagacatgacgggccgcccactc
gtgtacacggatggcattgacgtgcaggcgtttgtcgacaagtccgttgcgcgtgtgcgc
atgcactcgagcaatgagctgattgtcacggccacgggcaagggagaggcgctcttgcga
gtgtctgtgcacaactcgcccgtcagcaactacttccgcgtcctggtcacgtcccagctc
aacccaagtgacgtaactgtgcctgttggctcgtccttctgcttccctccatccgaggcg
tctcgcaacgccacctgggcctcatccagcccagccgtcgctaccgtcaagccgccaggc
cacgtcacgatccacagcgagggcgagaccgagatctcgcgcacgacggcgcagggcatt
gcaaagggcagcctgcgcagccgccctattgccgccgcccgctttgttgcccagcccgcg
ttcatcaccaacctggaggccagcaacgcgttttcgctgcgcttgtcgtatcacagccgc
agcggtgccaacttctcgctcatcccggcgtgccagggcaaaggcttccagcccatggcc
aaggtgacgtgtgctgctgagggccacccacacctctcggtcgcacccgcgtttgacgct
gcgagcggcaagcacgcctgccagattaccgtttcctccaacgatgtgctctctgcgtct
ccacttgtcgtcacggccacggtctctccgcttgccacttcgtcttcttcatcatcctcc
acagccgtggttgcgcgcaccgctgtgactgccgcccccgccttccacgtggagtcctct
gttgtttcgctcggcagccggcttgcctccgctgccacgctgcgtgtgcgacaagtgctt
gacctgtcgcagcttggcgtggaggttgacagcaactcgctgctgccggacgcgggctcg
accagcgaccggcagtacttcacctcggcctcgctgcgcatcacgtttgtgatgcaggcg
caggctgaggcggttgtcacggttgagcgcatgattgcttctgcacgcgagcacacgctg
gttgtcttcaacaagtacacgcagcagcgccacgccgtgtccgtcgccgtcctcgacgag
cctgagcccgaagcgccaccgacgcgtgcaccgccagcagcgaccagcgaccagcacggc
gtgattacgatggaccagagcacgggcgcagcaccgtctaccccctcgccgccagacaac
tcgtggccgctgtgggtgtatgtggtgctgttcttcctcttctgcatcattctgctgctt
gtgctgcatcttccgtccattccccctcgcgacccaaaccagagcctctacgttggcccc
caatcgccacaacgtggcgcgttttcgcgctttggatcgccgctgcagctcgtgtctcgc
attccgcgcacgtccgccatgacacgcgcaaccccaaccaagctgggcaagacgaccaca
gcagcgccagccacgacgaccgcgggtgcgggtgttgtgcggccgacaatgacaacgcca
acacgagaccgcagactccaggcgcgctcctctcgcttctcctag
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