Streptomyces rimosus: CP984_11680
Help
Entry
CP984_11680 CDS
T07052
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
srim
Streptomyces rimosus
Pathway
srim03030
DNA replication
srim03410
Base excision repair
srim03420
Nucleotide excision repair
srim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP984_11680 (ligA)
03410 Base excision repair
CP984_11680 (ligA)
03420 Nucleotide excision repair
CP984_11680 (ligA)
03430 Mismatch repair
CP984_11680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srim03032
]
CP984_11680 (ligA)
03400 DNA repair and recombination proteins [BR:
srim03400
]
CP984_11680 (ligA)
Enzymes [BR:
srim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP984_11680 (ligA)
DNA replication proteins [BR:
srim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP984_11680 (ligA)
DNA repair and recombination proteins [BR:
srim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP984_11680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP984_11680 (ligA)
MMR (mismatch excision repair)
DNA ligase
CP984_11680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP984_11680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
QEV75596
LinkDB
All DBs
Position
complement(2870261..2872477)
Genome browser
AA seq
738 aa
AA seq
DB search
MAGEEQQAGHAVPAKAREEHAHLAEQIEEHRFRYYVRDAPVISDAEFDKLLRSLEALEEK
HPELRTPDSPTQKVAGQYETEFTEVAHRERMLSLDNAFDDEELAAWAERIATELGGDPKS
AGYHFLCELKVDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTITEIPDRLKGDRVP
ELVEVRGEVYFPMEKFLELNERLVADGKPPFANPRNAAAGSLRQKDPKVTATRPLHMVVH
GIGAREGFDIDCQSHAYDLLREWGLPTSDHNEVVDSLEAVRDFIKRYGDPETRRTAVAHE
IDGTVVKLDEIALQGRLGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAVV
EPVTVAGSEVEFATLHNQDVVKAKGVYIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFV
MPAECPECGTALQPAKEGDVDLRCPNARSCPAQIRERLFYLAGRKSLDIENFGYVAATAL
SQPLEPAEPPLKDEGDLFNLSIEQLLPIKSHVLDPDSGLPKRDPKTGEEKVVTFFANQKG
EPKKNALAMLENIQAAKERPLARILTGLSIRHVGPVAAQALAMEFRSLDRIRDASEEELA
AVEGVGATIAASLKQWFAEDWHREIVEKWRAAGVRMEEQSAEDEGPRPLEGVTVVVTGTL
QSHTRDGAKEALQRLGAKVTGSVSKKTGFVVVGDNPGSKYDKAMQLKVPVLDDDGFAVLL
EQGPDEARAVAVTPPEGE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaagagcagcaggcggggcacgcggtgcccgcgaaggcgcgggaagagcac
gcccatctggccgagcagatcgaggagcaccgcttccgctattacgtcagggacgccccc
gtcatcagcgacgcggagttcgacaagctgctccgctcgctggaggcgctggaggagaag
cacccggagctgcgcacgcccgactcaccgacccagaaggtcgccgggcagtacgagacc
gagttcaccgaggtcgcccaccgcgagcggatgctctcgctggacaacgccttcgacgac
gaggagctggcggcctgggccgagcggatcgcgacggagctgggcggcgaccccaagagc
gccggctaccacttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctgacgtac
gagaacggccggctcacccgcgccgccacccgcggcgacggccgtacgggtgaggacatc
acgcccaacgtccgcaccatcaccgagatccccgaccgcctcaagggcgaccgcgtcccg
gagctggtggaggtccgcggcgaggtctacttccccatggagaagttcctcgaactgaac
gagcggctggtcgccgacggcaagcccccgttcgccaacccgcgcaacgccgcagcgggc
tcgctgcgccagaaggaccccaaggtcacggccacccgcccgctccacatggtcgtgcac
ggcatcggcgcccgcgagggcttcgacatcgactgccagtcgcacgcgtacgacctgctg
cgcgaatggggcctgcccacctccgaccacaacgaggtcgtggactccctggaggccgtg
cgcgacttcatcaagcgctacggcgacccggagacccggcgcaccgccgtcgcccacgag
atcgacggcacggtcgtcaagctcgacgagatcgctctgcagggccgcctcggctccacc
tcgcgcgccccccgctgggcgatcgcgtggaagtacccgccggaggaggtcaacaccaag
ctggtggacatccgcgtcggcgtcggccgcaccggccgcgtcacgccgtacgccgtggtc
gagccggtcactgtcgccggctccgaggtcgagttcgccacgctccacaaccaggacgtg
gtcaaggccaagggcgtctacatcggcgacacggtcgtgctgcgcaaggcgggcgacgtg
atcccggagatcctggggcccgtggtggacctgcgggacggcagcgagcgggagttcgtg
atgcccgccgagtgccccgagtgcggtacggcgctccagcccgccaaggagggcgacgtc
gacctgcgctgccccaacgcccgctcctgccccgcccagatccgcgagcggctgttctac
ctggccggccgcaagtccctggacatcgagaacttcggctatgtggccgccacggcgctc
agccagcccctggagcccgccgagccgccgctgaaggacgagggcgacctcttcaacctg
tccatcgagcagctgctgcccatcaagtcccatgtcctggacccggacagcggcctgccc
aagcgggaccccaagacgggcgaggagaaggtcgtcaccttcttcgccaaccagaagggc
gagccgaagaagaacgccctggcgatgctggagaacatccaggcggccaaggagcgcccg
ctggcgcgcatcctgaccggtctgtcgatccgtcatgtcggcccggtggcggcccaggcg
ctggccatggagttccgttcgctggaccggatcagggatgcgagcgaggaggagctggcc
gccgtcgaaggggtcggcgcgaccatcgcggcctcgctcaagcagtggttcgccgaggac
tggcaccgcgagatcgtggagaagtggcgggccgccggtgtccggatggaggagcaatct
gccgaagatgaaggcccgcggcctctggaaggcgtcaccgtcgttgtaacgggcacactt
cagtcacacaccagagatggcgcgaaagaagccctgcagcggctcggagcgaaggtgacc
ggttcggtatcgaagaagaccggtttcgtggtggtgggagacaatcctggttcgaagtac
gacaaggccatgcagttgaaggtgcctgtgctggacgatgacggcttcgcggtgctgctg
gagcagggtcccgatgaagcacgagcggtagctgtcactccgcctgagggcgagtga
DBGET
integrated database retrieval system
