Streptomyces roseicoloratus: RGF97_08820
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Entry
RGF97_08820 CDS
T09671
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sroc
Streptomyces roseicoloratus
Pathway
sroc03030
DNA replication
sroc03410
Base excision repair
sroc03420
Nucleotide excision repair
sroc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sroc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGF97_08820 (ligA)
03410 Base excision repair
RGF97_08820 (ligA)
03420 Nucleotide excision repair
RGF97_08820 (ligA)
03430 Mismatch repair
RGF97_08820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sroc03032
]
RGF97_08820 (ligA)
03400 DNA repair and recombination proteins [BR:
sroc03400
]
RGF97_08820 (ligA)
Enzymes [BR:
sroc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RGF97_08820 (ligA)
DNA replication proteins [BR:
sroc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RGF97_08820 (ligA)
DNA repair and recombination proteins [BR:
sroc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RGF97_08820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGF97_08820 (ligA)
MMR (mismatch excision repair)
DNA ligase
RGF97_08820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RGF97_08820 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
zf-TFIIB
DUF6782
Motif
Other DBs
NCBI-ProteinID:
WMX44936
UniProt:
A0AA51VU16
LinkDB
All DBs
Position
complement(1979447..1981624)
Genome browser
AA seq
725 aa
AA seq
DB search
MAVEQGAPAEAREKHAELAEQVEEHRFRYYVKDQPVVSDAEFDKLLRSLEALEEQYPELR
TPDSPTQKVAGSYETDFASVEHRERMLSLDNAFDDAELSAWAERVAKDVGASDHHFLCEL
KVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIADIPERLRGDRIPALVEIRGEV
YFPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGARDGLD
ITRLSDAYELLHEWGLPTARHNRVVESLDGVREFITYYGENRHSVEHEIDGVVVKLDEIA
LQGRLGSTARAPRWAIAWKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGSEVEF
ATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECPECGTPL
KPMKEGDIDLRCPNARTCPAQLRERLAFLAGRSALDIENFGMVAAAALTRPLEPAEPPLT
DEGDLFDLTIEQLLPVRAYVLDPDSGLPKRDPKTGEEKIVPVFANQKGEPKKNALAMLEN
IAAAKTRPLARFLNGLSIRHVGPVAAEALAREFRSLERIEQATEEELAAVDGVGGIIAAA
VKQWFAEEWHREIVRKWRAAGVSFEDEGAGEDEGPRPLEGLTVVVTGTLQDYTRDGAKES
LQSLGAKVAGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLDEAGFRILLEQGPEAAQEAA
LPVAE
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtggcagtcgaacagggggcccccgccgaggcgcgggagaagcacgccgagctggcggag
caggtcgaggagcaccgcttccggtactacgtgaaggaccagccggtcgtcagcgacgcg
gagttcgacaagctcctgcggtcgctggaggcgctggaggagcagtacccggagctgcgg
acgccggattcgccgacccagaaggtcgccgggtcgtacgagacggacttcgcctccgtg
gagcaccgggagcggatgctctcgctggacaacgcgttcgacgacgcggagctctcggcc
tgggccgagcgggtcgccaaggacgtcggcgcctccgaccaccacttcctgtgcgagctg
aaggtcgacggcctcgcggtcaacctcacgtacgagcacggccggctgacccgggcggcg
acccgcggcgacggccgtacgggcgaggacatcacgccgaacgtgcggaccatcgcggac
atcccggagcggctgcgcggcgaccggatcccggcactggtcgagatccgcggcgaggtc
tacttcccgatggaggccttcgaggggctgaacgcgcgcctggtggaggccggcgacaag
ccgttcgccaacccgcggaacgcggcggccggttcgctgcgccagaaggacccgaaggtg
acggcgacccgcccgctgcacatggtggtgcacggcatcggcgcccgcgacggcctcgac
atcacccgcctctccgacgcgtacgaactgctccacgagtggggcctgcccaccgcccgg
cacaacagggtcgtggaatccctcgacggcgtacgggagttcatcacgtactacggcgag
aaccgccactcggtggagcacgagatcgacggcgtcgtcgtcaagctcgacgagatcgcg
ctccagggccggctcggctccacggcacgcgccccgcgctgggccatcgcgtggaagtac
gcgccggaagaggtcaacaccaagctgatcgacatcaaggtcggcgtcggacggaccggt
cgcgtcaccccgtacgcgcaggtggagccggtgacggtggccggttccgaggtcgagttc
gccaccctgcacaaccaggacgtggtgaaggccaagggcgtgctcatcggcgacacggtg
gtgctgcgcaaggccggtgacgtgatcccggagatcctgggtccggtcgcggacctccgg
gacggcagcgagcgcgagttcgtcatgccggccgagtgcccggagtgcgggacgccgctg
aagccgatgaaggaaggcgacatcgacctgcgctgccccaacgcgcggacgtgtccggcc
cagctgcgcgagcggctggccttcctggccgggcgctccgccctggacatcgagaacttc
ggcatggtcgcggcggcggcgctgacccgccccctggagccggccgagccgccgctgacc
gacgagggcgacctcttcgacctcacgatcgagcagctgctgccggtccgggcgtacgtc
ctcgaccccgacagcgggctgcccaagcgggacccgaagaccggcgaggagaagatcgtc
ccggtcttcgccaaccagaagggcgagccgaagaagaacgcgctcgcgatgctggagaac
atcgcggcggcgaagacccgcccgctggcccgcttcctcaacggcctgtcgatccgtcac
gtcggcccggtcgccgccgaggcgctggcccgcgagttccgctcgctggagcgcatcgag
caggcgacggaggaggagctggcggcggtcgacggcgtcggcgggatcatcgccgccgcc
gtgaagcagtggttcgccgaggagtggcaccgggagatcgtgcgcaagtggcgtgcggcc
ggggtgagtttcgaggacgagggcgccggcgaggacgaggggccgcgtccgctggaggga
ctgaccgtggtggtcaccggcactctgcaggactacacccgggatggcgcaaaagagtcg
ctgcaatccctgggagccaaggtcgccggttccgtttcgaagaagaccgcgttcgtcgtc
gtcggcgacaacccgggctccaagtacgacaaggcgatgcagctgaaggttccggttctc
gacgaggccggcttccggatcctgctcgaacaaggtcccgaagccgctcaggaggctgct
ctgcccgtcgccgagtag
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