Skermanella rosea: JL101_020395
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Entry
JL101_020395 CDS
T07666
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sroe
Skermanella rosea
Pathway
sroe03030
DNA replication
sroe03410
Base excision repair
sroe03420
Nucleotide excision repair
sroe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sroe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JL101_020395 (ligA)
03410 Base excision repair
JL101_020395 (ligA)
03420 Nucleotide excision repair
JL101_020395 (ligA)
03430 Mismatch repair
JL101_020395 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sroe03032
]
JL101_020395 (ligA)
03400 DNA repair and recombination proteins [BR:
sroe03400
]
JL101_020395 (ligA)
Enzymes [BR:
sroe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JL101_020395 (ligA)
DNA replication proteins [BR:
sroe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JL101_020395 (ligA)
DNA repair and recombination proteins [BR:
sroe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JL101_020395 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JL101_020395 (ligA)
MMR (mismatch excision repair)
DNA ligase
JL101_020395 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JL101_020395 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_ligase
Zn_ribbon_NUD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UEM02343
LinkDB
All DBs
Position
4355423..4357537
Genome browser
AA seq
704 aa
AA seq
DB search
MTAGAREAVRDIPADELSPEQAAEELAALASEIAHHDTLYHQQDRPEISDAAYDALRRRN
DSIELRFPELKRGDSPSQKVGAAPAAGFAKVRHAVPMLSLGNAFAGEDVHEFVQRICRFL
NIKEADQVEFVAEPKIDGLSCSLRYERGRLVLAATRGDGQEGEDVTANVRTIGDVPKQLP
GPVPDVLEVRGEVYMDRAEFMALNERQAAAGKPIFANPRNAAAGSLRQLDSRITASRPLG
FFGYSWGEVSEPLGATQWEVRRRLEDWGFRPNQPAALCCGADALLRYYDGIQERRSSLAF
DIDGVVYKVNRLDWQDRLGFVSRAPRWAIAHKFPAEQAQTRLKDITIQVGRTGAMTPVAE
LEPVTVGGVVVSRATLHNEDEIRRKDVRKGDLVVVQRAGDVIPQIVQAVLDKRPAEAEPY
VFPDHCPVCGSAAVRPEGEVIRRCTGGLICEAQAVERLRHFVSRDAFDIEGLGEKIIREF
WDEGMVRRPGDIFRLREKDAASLTRLKNRHGWGEKSAAKLFDSIDARRDIPLDRFIFALG
IPQVGQTTARLLARSYRSFDHWREQMAAAQVHGSEAYGELIGIEQIGPSVADDLLGFFAE
PHNLEVLEDLLAAGVTVTDFVPPRTQSSPIAGKTVVFTGTLETVTRSEAKARAESLGAKV
AGSVSSKTDYVVVGADAGSKATKARDLGLTTLTEQEWLDLVASQ
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgggtgcccgcgaagccgtccgcgacatccccgccgacgaactctcccccgaa
caggccgccgaggaactggcggccctggcgtcggagatcgcccaccacgacaccctctac
caccagcaggaccggccggagatctccgacgccgcctacgacgcgctccgccgccgcaac
gactcgatcgagctgcgcttccccgagctgaagcgcggcgacagcccctcccagaaggtc
ggggccgcccccgccgcgggcttcgccaaggtccgccacgccgtgccgatgctgtcgctg
ggcaacgccttcgcgggcgaggacgtccacgagttcgtccagcgcatctgccgcttcctc
aacatcaaggaagccgaccaggtcgagttcgtcgccgagcccaagatcgacggcctgtcc
tgctcgctgcgctacgagaggggccggctcgtcctcgccgccacccgcggcgacggccag
gagggggaggacgtcaccgccaacgtccggaccatcggcgacgtgccgaagcaactcccc
ggcccggttcccgacgtcctggaggtgcgcggcgaggtctacatggaccgggccgagttc
atggccctgaacgagcgccaggccgccgccggcaagccgatcttcgccaacccgcgcaac
gccgccgccggcagcctgcgccagctcgactccaggatcaccgcgtcgcggcccctgggc
ttcttcggctattcctggggcgaggtgtccgagccgctgggcgccacccaatgggaggtg
cgccggcgcctggaggactggggcttccgcccgaaccagccggcggcgctgtgctgcggc
gccgacgcgctgctgcgctattacgacgggatccaggagcggcgctccagcctcgccttc
gacatcgacggcgtcgtatacaaggtcaaccggctggattggcaggaccggctgggcttc
gtcagccgggcgccgcgctgggccatcgcccacaagttcccggccgagcaggcccagacc
cgcctcaaggacatcaccatccaggtcggccggaccggcgccatgacccccgtggccgag
ctggagccggtgaccgtcggcggcgtcgtggtcagccgcgccaccctgcacaacgaggac
gagatccggcgcaaggacgtgcgcaagggcgacctggtcgtcgtccagcgcgccggcgac
gtgatcccgcagatcgtccaggccgtcctggacaagcgcccggccgaagccgagccctac
gtcttccccgaccattgcccggtgtgcggcagcgccgccgtccggcccgagggcgaggtg
atccgccgctgcaccggcggcctgatctgcgaggcccaggccgtcgagcgcctgcgccat
ttcgtcagccgcgacgccttcgacatcgagggcctgggcgagaagatcatccgggaattc
tgggacgagggcatggtccgccgccccggcgacatcttccgcttgcgcgagaaggacgcc
gccagcctgacccggctgaagaaccgccacggctggggcgagaagtcggcggccaagctg
ttcgacagcatcgacgcccgccgcgacatcccgctcgaccgcttcatcttcgcgctcggc
attccccaggtcggccagaccaccgcccgcctgctggcccgcagctaccgcagcttcgac
cattggcgggagcagatggccgcggcgcaggtccacggctccgaagcctatggcgaactg
atcgggatcgagcagatcggcccctcggtcgccgacgacctgctgggcttcttcgccgag
ccgcacaatctggaagttctggaagacctgctggccgccggggtcaccgtcaccgacttc
gtgccgccccggacccagtcctcgcccatcgccggcaagacggtcgtgttcaccggcacc
ctcgaaaccgtgacccgcagcgaggccaaggccagggcagaatccctcggcgccaaggtg
gccggctccgtctcgtccaagaccgactatgtcgtggtcggcgccgatgccggcagcaag
gcgaccaaggcccgcgacctcggcctcaccaccctgaccgagcaggagtggctggacctc
gtggcctcgcagtag
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