Streptococcus suis ST1 (serotype 1): SSUST1_0778
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Entry
SSUST1_0778 CDS
T02125
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
srp
Streptococcus suis ST1 (serotype 1)
Pathway
srp03030
DNA replication
srp03410
Base excision repair
srp03420
Nucleotide excision repair
srp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SSUST1_0778 (ligA)
03410 Base excision repair
SSUST1_0778 (ligA)
03420 Nucleotide excision repair
SSUST1_0778 (ligA)
03430 Mismatch repair
SSUST1_0778 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srp03032
]
SSUST1_0778 (ligA)
03400 DNA repair and recombination proteins [BR:
srp03400
]
SSUST1_0778 (ligA)
Enzymes [BR:
srp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SSUST1_0778 (ligA)
DNA replication proteins [BR:
srp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SSUST1_0778 (ligA)
DNA repair and recombination proteins [BR:
srp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SSUST1_0778 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SSUST1_0778 (ligA)
MMR (mismatch excision repair)
DNA ligase
SSUST1_0778 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SSUST1_0778 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Bep_C_terminal
A24_N_bact
RNA_lig_T4_1
SLX1_C
Motif
Other DBs
NCBI-ProteinID:
AER21160
LinkDB
All DBs
Position
790036..791994
Genome browser
AA seq
652 aa
AA seq
DB search
MKTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG
GKVLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRKEFPQATYICELKIDGLSISLTYE
AGNLVVGATRGDGSVGENITENLKRVADIPLTLPEAVDITVRGECYMPKASFDRVNKQRQ
EAGEAEFANTRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSEATSQSQVLEKLDALGFV
TNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLKVVDKYRKEQEIMPIPSHCPSCQSDLQHYEDEVALRCINPICPS
QLMSKLEHFASRDAMNIAGLGSSIVEKLFGAGLVNDVADIYKLTVDDLLTLEGFKEKSAD
KLYQAIQTSKSNSAERLLFGLGIRHVGSKASKILVEKFGDLETLAFADQEAIASLEGLGQ
VIAKSLTTFFASEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNE
AKAKLEALGANVAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagaatatcagaattagttagcgtgctcaatcaatacgctaaagagtattat
caattagaccaacctagcgtatcagatgcagaatatgatacgctttatcgtgaattagta
gagctagaaacggctcatccagaactgattttaccagatagtcctacccatcgggtcggg
ggaaaggtgctagacggatttgaaaaatatagtcatgtttatcctctttttagtttgcag
gatgccttttctcgtgaagagttagaagcttttgaccagcgagttcgcaaggaatttcct
caagcaacgtatatctgtgaattgaagattgatggtctatctatttccctgacctatgaa
gcgggtaatctagtcgtgggtgctacacgtggtgacggtagtgtcggtgaaaatatcaca
gaaaatctcaaacgagtggctgatattcctttgaccttacctgaagctgtggacatcact
gtccgaggtgagtgttatatgccaaaagcttcctttgaccgtgttaacaaacagcgtcag
gaggctggtgaagctgaatttgctaatacgcgtaatgcagcagcagggaccctccgccag
cttgatacgggagtggtggcccagcgtggcctcgctaccttcctctaccaagaggctagt
ccatctgaagcgactagtcagtcacaagtactggagaaactggatgctctgggatttgtg
accaaccacgaatattgcttggcggagtcgattgatgacacgtgggattttattgaaaaa
atagcagagcgtagagatgatttaccctatgagatagatggtgttgtcatcaaggtaaat
gatttagctatacaagaagaactaggatttacagttaaagcgcctcgatgggcagtagct
tacaagtttccagctgaggaaaaagaagcagaaatcttgtcggttgattggactgttggc
cgaacaggtgttgtgacaccaactgccaatcttagtcctgttcaactggcaggaacgact
gtcagtcgagcgaccttgcacaacgtagattatatcgccgaaaaagatattcgtattggc
gatacggtcattgtttataaggcgggagatattattccagcagttctgaaagtggtggac
aagtatcgaaaagagcaagaaatcatgcccattcctagtcattgtccgtcttgtcagagc
gacctacaacactatgaggacgaagttgccctccgctgtatcaaccctatttgtcctagc
cagctgatgagtaagttggaacattttgcaagtcgagatgctatgaacatcgcagggctg
gggtcttcaatcgttgaaaaactctttggagcaggcttggtaaacgatgttgctgatatt
tataaattaactgttgatgacctattgaccctggaaggtttcaaagaaaaatcagctgac
aagctctatcaagccattcaaacttctaagagcaactcagcagaacgcctcctatttgga
ctaggtattcgccatgtaggtagtaaggcaagtaagattttagtagaaaaatttggtgat
ttagaaactttagcatttgctgatcaagaagcaattgcttcgctagaagggcttggtcag
gttattgctaagtctttgacaactttttttgctagtgagggtgcgcaacaacttttagcc
gaacttaaggaagctaaggtaaacttaacctatctcggacaagtagtagatgaaaatgct
gcgctatcgggtatgacagttgtactgactggtaaattggagcgaatgaaacgaaacgaa
gccaaagccaaattagaagctttaggggcaaatgtagcgggatctgtttctaaaaaaact
aatcttgtggttgccggaacagatgcaggcagtaaattgaccaaagcacaggagctaggt
atcgaaattaaagatgaggcttggttagagagcttgtaa
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