Segniliparus rotundus: Srot_1577
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Entry
Srot_1577 CDS
T01238
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
srt
Segniliparus rotundus
Pathway
srt03030
DNA replication
srt03410
Base excision repair
srt03420
Nucleotide excision repair
srt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Srot_1577
03410 Base excision repair
Srot_1577
03420 Nucleotide excision repair
Srot_1577
03430 Mismatch repair
Srot_1577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srt03032
]
Srot_1577
03400 DNA repair and recombination proteins [BR:
srt03400
]
Srot_1577
Enzymes [BR:
srt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Srot_1577
DNA replication proteins [BR:
srt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Srot_1577
DNA repair and recombination proteins [BR:
srt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Srot_1577
NER (nucleotide excision repair)
GGR (global genome repair) factors
Srot_1577
MMR (mismatch excision repair)
DNA ligase
Srot_1577
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Srot_1577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ADG98039
UniProt:
D6Z7V9
LinkDB
All DBs
Position
1567918..1569990
Genome browser
AA seq
690 aa
AA seq
DB search
MSKGKAPARLDPAQRWRALADEIREHQFRYYVLDSPTVTDAQFDVLLRELQELEEEHPEL
ASADSPTKLVGGAGFTTDFAEVGHIEPMLSLDNVFDEEGLLAWAQRTSNAAERAIRFECE
LKIDGLGVSLVYEHGRLARAATRGDGRTGEDVTLNVRTIGDVPHELRLAPGEAPPELLEV
RGEVFFRLKDFEALNASLVAEGKPPFANPRNSAAGSLRQKNPAVTAKRNLTMLCHSFGAT
SSWKPATRSAAYEKLREWGLPVSEYNTTLDTPEAVLEHIRAWGNRRAEIAYEIDGLVVKV
EEMDLYGQLGHTSRAPRWAIAYKYPPQEVQTKLRDIRVNVGRTGRVTPFAFMDPVLVAGS
TVSLATLHNASEVERKGVLIGDTVVLRKAGDVIPEVLGPVAALRDGTERQFVMPDVCPEC
GTKLAPAKESDVDIRCPNARTCPAQLRERVFHVAGRGAFDIEALGYEAATDLLKHQVIED
EGDLFDLDEQRLLRTEIFVNTSGKNAGKLSANGQKLLHNLEQAKNRDLWRVLVALSIRHV
GPTAARALATRFGSVDAIFSADEQTLAEVDGVGPTIAASVIEWFQVDWHRSILARWAAAG
VKMAEEREELPQTLAGLTIVVTGSLEGFTRESVQEAIIARGGKASGSVSKKTSYVVAGEG
GGSKREKAEQLGVPVIDEAAFLKLLRGEQL
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaggcaaggcgcccgcgcggctcgaccccgcgcagcggtggcgtgcgctggcc
gacgagatccgcgagcaccagttccggtattacgtgctggactcgccgacggtcaccgac
gcgcagttcgacgtgctcttgcgcgagttgcaggaacttgaggaggagcaccccgagctc
gcgtcggcggattcgccgaccaaacttgtcggcggggcgggtttcaccactgatttcgcc
gaggtcggacatatcgagccgatgttgtccctggacaatgtcttcgacgaggagggcctg
ctcgcttgggcgcaacggacgtcgaacgccgcggagcgggcgatccggttcgagtgcgaa
ctgaagatcgacggcctcggggtgagcctcgtgtatgagcacggccgccttgcgcgggcc
gccaccagaggcgacggcaggaccggggaggacgtgactctgaacgtgcgcaccattggc
gatgtgccgcacgaattgcgcctggcgccaggggaggccccgccagagctgctcgaagtt
cgcggcgaggtgttcttccggctcaaggacttcgaagcgctcaacgcctcgctggtcgcg
gagggcaaacccccgttcgcgaacccccgcaacagcgcagcgggctccttgcggcaaaag
aaccctgccgtcaccgccaaacgcaatctgacgatgctgtgccacagcttcggcgcgacg
agctcctggaaaccggccactcgcagcgccgcgtacgaaaagctccgcgaatgggggctg
ccggtctcggagtacaacaccacgctcgacacccccgaggctgtgttggagcacatccgc
gcctgggggaacagacgcgccgagatcgcctacgagatcgacggcctcgtcgtgaaggtg
gaagagatggacctgtacggccagctcggccacacctcgcgcgcgccgagatgggccatc
gcctacaaatacccgccccaagaagtgcagaccaagctccgcgacatccgggtgaatgtg
ggccgcacgggccgggtcaccccgttcgcgttcatggacccggtcctcgtggccgggtcc
acggtcagcctcgcgacgctgcacaacgcctccgaagtggagcgcaaaggcgtgctcatc
ggcgacacggtcgtgctccgcaaagccggcgatgtgattcccgaggtcttgggcccggtg
gcggcgttgcgcgacgggacagagcggcagttcgtcatgccggacgtctgcccggaatgc
ggcacaaagctcgccccggcgaaggagtccgacgtcgacatccgatgcccgaacgcccgc
acatgtcccgcgcagctgcgcgagcgggtgttccacgtcgcaggccgaggagcgttcgac
atcgaggctctcggctacgaggccgcgaccgacttgctcaaacaccaggtcatcgaggac
gagggggatctgttcgacctcgacgagcaacggctgctgcgcacggagatcttcgtcaac
acatcgggaaagaacgcgggcaagctctctgcgaacggccagaagcttctgcacaacctc
gaacaggcgaaaaaccgcgacctgtggcgtgtgctcgtcgcgctctccatccgccacgtc
ggccccaccgccgcccgcgccctcgcgacgaggttcgggtctgtggacgcgattttttcg
gcggacgaacagaccctggccgaagtggacggcgtcggccccaccatcgccgcttcggtc
atcgaatggttccaggtggactggcaccgctccatcctcgcgcgatgggccgcggcaggg
gtgaagatggccgaggaacgagaggagttgccgcagacgctcgctggcctgaccatcgtg
gtcacgggctccttggaggggttcaccagggagagcgtccaagaggcgatcatcgcgcgc
ggcggcaaagcttccggctcggtctccaaaaaaacctcgtacgtggtcgctggtgagggc
gggggctccaagcgcgagaaagcggagcaactcggcgtgccggtcatcgacgaggcggcc
ttcctgaaacttctgcgaggagaacaactgtga
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