Streptomyces rutgersensis: F0345_21395
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Entry
F0345_21395 CDS
T08623
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
srug
Streptomyces rutgersensis
Pathway
srug03030
DNA replication
srug03410
Base excision repair
srug03420
Nucleotide excision repair
srug03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F0345_21395 (ligA)
03410 Base excision repair
F0345_21395 (ligA)
03420 Nucleotide excision repair
F0345_21395 (ligA)
03430 Mismatch repair
F0345_21395 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srug03032
]
F0345_21395 (ligA)
03400 DNA repair and recombination proteins [BR:
srug03400
]
F0345_21395 (ligA)
Enzymes [BR:
srug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F0345_21395 (ligA)
DNA replication proteins [BR:
srug03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F0345_21395 (ligA)
DNA repair and recombination proteins [BR:
srug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F0345_21395 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F0345_21395 (ligA)
MMR (mismatch excision repair)
DNA ligase
F0345_21395 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F0345_21395 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
QNE83352
UniProt:
A0A6A0BSY0
LinkDB
All DBs
Position
5069125..5071311
Genome browser
AA seq
728 aa
AA seq
DB search
MAGEQQNADVPADARERHKQLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRALTELEERYP
PLRTPDSPTQKVAGQYETEFTSVEHRERMLSLDNAFDDEELSAWADRVAKEAGAPGYHFL
CELKIDGLAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDVPALVEIR
GEVFFPMEEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGARE
GFTIDCLSHAYDLLRAWGLPTARHNKVVDGLEGVREFIRYHGDHRHSVEHEIDGVVVKLD
EVPLQGRLGSTSRAPRWAIAWKYPPEEVNSRLVDIRVGVGRTGRVTPYAQVEPVTVAGSE
VEFATLHNQDVVRAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMPAECPECG
TPLKPMKEGDIDLRCPNARSCPAQLRERIYYLAGRKSLDIENFGYVAATALTQPLEPSEP
PLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFANKQGEAKKNTLAM
LDHIEQAKQRPLARVLTGLSIRHVGPVAAQALAREFRSVERIEAATEEELARTEGVGPTI
AASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEGPRPLEGLTVVVTGTLEHHTRDNA
KEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQAKVPVLDEAGFAVLLEQGADAAR
EVALPLPE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcagaacgcagacgttcccgcggacgcgcgggaacggcacaagcaa
ctcgccgaacaggtcgaggagcaccgcttccgctactacgtcaacgaccagcccgtcgtc
agcgacgccgagttcgaccagctgctgcgcgccctcaccgagctggaggagcggtacccg
ccgctgcgcacccccgactcgcccacccagaaggtcgccgggcagtacgagacggagttc
acctccgtcgagcaccgcgagcgcatgctctccctcgacaacgccttcgacgacgaggaa
ctctccgcctgggccgaccgggtcgccaaggaggccggcgcccccggctaccacttcctg
tgcgagctgaagatcgacggactcgccgtcaacctcacctacgaacacggccgcctcacc
cgcgccgccacccgcggcgacggccgcgtcggcgaggacatcacccccaacgtccgcacc
atctccgacatccccgagcggctgcacggtgacgacgtgcccgctctcgtcgagatccgc
ggcgaggtcttcttcccgatggaggagttcgagaagctcaacgcccgcctggtggaggcg
ggcgagaagcccttcgccaacccgcgcaacgccgccgccggctccctgcgccagaaggac
ccccgggtcaccgcgacccgcccgctgcacatggtcgtccacggcatcggcgcccgcgag
ggcttcaccatcgactgcctctcccacgcctacgacctgctgcgcgcctggggcctgccc
accgcccggcacaacaaggtcgtcgacggactggagggcgtccgcgagttcatccggtac
cacggcgaccaccggcactccgtcgagcacgagatcgacggtgtcgtcgtcaagctcgac
gaggtccccctccagggccgtctcggctccacctcccgcgccccgcgctgggccatcgcc
tggaagtacccgcccgaggaggtcaacagccgcctcgtcgacatccgcgtcggcgtcgga
cgcaccggacgcgtcaccccgtacgcccaggtcgaaccggtcaccgtggccggctccgag
gtcgagttcgccaccctgcacaaccaggacgtggtccgtgccaagggcgtcctcatcggc
gacaccgtggtcctgcgcaaggccggcgacgtcatcccggagatcctcggccccgtcgcc
gacctccgcgacggcaccgagcgccccttcacgatgcccgccgagtgccccgagtgcggc
accccgctgaagccgatgaaggagggcgacatcgacctccgctgccccaacgcccgctcc
tgccccgcccagctgcgcgagcggatctactacctcgccggccgcaagagcctggacatc
gagaacttcggctacgtcgccgccaccgccctcacccagccgctggagccctccgagccg
ccgctgcgcgacgagggcgacctcttcgacctcaccgtcgaccagctcctgcccatccgc
tcctacgtcctcgacccggacagcggcctgcccaaacgcgacccgaagaccggcgaggag
aagatcgtcaccttcttcgccaacaagcagggcgaggcgaagaagaacaccctcgccatg
ctcgaccacatcgaacaggccaagcagcgccctctcgcccgcgtcctcaccggcctctcc
atccgccacgtcggcccggtcgccgcccaggcgctggcccgcgagttccgctccgtcgag
cggatcgaggccgccaccgaggaggagctggcgcggaccgaaggcgtcgggccgaccatc
gccgcctccctcaagagctggttcgccgaggagtggcaccgcgagatcgtccgcaagtgg
cgcgaggcgggcgtgcggatggaggaggagtccaccggcgaggacgaaggcccccgcccg
ctggagggcctcaccgtcgtcgtcaccggcaccctggagcaccacacccgggacaacgcc
aaggaagccctccagagcaggggcgccaaagtgacaggttctgtctcgaagaagacttcg
ttcgtggtcgtcggtgacaatcccggctccaagtacgacaaggccatgcaggcgaaagtc
ccggtcctggacgaggcgggcttcgccgtcctcctcgaacagggcgccgacgccgcacgt
gaagtggcacttccgcttcccgagtga
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