Sinocyclocheilus rhinocerous: 107720345
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Entry
107720345 CDS
T04916
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
srx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107720345 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
107720345 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107720345 (lsm3)
03041 Spliceosome [BR:
srx03041
]
107720345 (lsm3)
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107720345 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
107720345 (lsm3)
Spliceosome [BR:
srx03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107720345 (lsm3)
Complex C
U2 snRNP components
107720345 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Motif
Other DBs
NCBI-GeneID:
107720345
NCBI-ProteinID:
XP_016383510
LinkDB
All DBs
Position
Unknown
AA seq
102 aa
AA seq
DB search
MADDAEQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacgctgagcagcaacaaaccaccaacaccgtagaagagcctctggatctg
atccggctgagtctggatgagcggatctacgtgaagatgcgaaacgacagagaactgcgc
ggcagactgcacgcctatgaccagcacttgaacatgatcctcggagatgttgaagagaca
gtgacgactgtggaaatcgatgaggagacgtatgaggagatttataagtcgacgaagcgg
aacatccccatgctgtttgttcgaggagatggagttgtgttggtggctccgccgctgagg
gtcggataa
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integrated database retrieval system
