Streptococcus salivarius HSISS4: HSISS4_01459
Help
Entry
HSISS4_01459 CDS
T04634
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssah
Streptococcus salivarius HSISS4
Pathway
ssah03030
DNA replication
ssah03410
Base excision repair
ssah03420
Nucleotide excision repair
ssah03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HSISS4_01459 (ligA)
03410 Base excision repair
HSISS4_01459 (ligA)
03420 Nucleotide excision repair
HSISS4_01459 (ligA)
03430 Mismatch repair
HSISS4_01459 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssah03032
]
HSISS4_01459 (ligA)
03400 DNA repair and recombination proteins [BR:
ssah03400
]
HSISS4_01459 (ligA)
Enzymes [BR:
ssah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HSISS4_01459 (ligA)
DNA replication proteins [BR:
ssah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HSISS4_01459 (ligA)
DNA repair and recombination proteins [BR:
ssah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HSISS4_01459 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HSISS4_01459 (ligA)
MMR (mismatch excision repair)
DNA ligase
HSISS4_01459 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HSISS4_01459 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Relaxase_C
5_3_exonuc
UPF0758_N
E1-E2_ATPase
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ALR80471
LinkDB
All DBs
Position
complement(1654251..1656197)
Genome browser
AA seq
648 aa
AA seq
DB search
MKELVVKLNQYAKEYYTEDNPSVSDADYDKLYRELVALEAEYPELVQADSPTHRVGGLVL
DGFEKYQHEYPLYSLQDAFSREELDAFDKRVKDEFPNADYMAELKIDGLSISLTYVDGIL
QVGATRGDGSVGENITENVKRISDIPLKLDQPLNITVRGECYLPRAEFERINIQRQENGE
AEFANPRNAAAGTLRQLDTKVVAERRLATFLYQEASPTERLTQNDVLNEVAELGFSVNPR
RIVTSSMDEIWDFIQALGQDRDHLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIAYKFP
AEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIGDTVI
VYKAGDIIPAVLRVVESKRTTQEPMEVPTQCPSCGSGLLHFEDEVALRCINPSCPAQIKE
GLIHFASRDAMNIAGMGPSVVEKLFKAELVKDVADIYGLNSQDFLQLEGFKEKSAEKLYA
AIQASKENSAEKLLYGLGIRHVGAKVSKQLLEAFGSIQELASADVEAIAAVDGLGEVIAK
SIQRYFAKEEAQVLMKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAK
LEALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagctggttgttaaacttaaccagtatgcaaaagagtattatacggaagataat
ccatcggtgtcagatgcagactacgataagctttatcgtgagcttgtagctttggaagct
gaatatccagaacttgttcaagcagatagtccaacacatcgtgtgggagggctggtactt
gatggttttgaaaaatatcaacatgagtatccgctttatagtttgcaggatgctttttca
cgagaagagctagatgcctttgataagagggttaaggacgaatttcctaatgctgattat
atggcggaactcaaaatcgatgggctctctatctcgttgacctatgtggatggtattctc
caggtaggtgcgacacgtggtgatggttctgtaggtgagaatatcactgaaaatgtcaag
cgtatctcagatattcctctcaagttggaccaacctcttaatattacggtgcgtggggag
tgttacctgccacgggctgagtttgaacgcatcaacatccaacgccaggaaaatggtgag
gccgaatttgccaatccacgtaatgctgcagcaggaactcttcgtcaattagataccaaa
gtggttgcagaacgtcgtttggcgactttcctttatcaggaagctagtccaacggagcgt
ctcacacaaaatgatgtcttaaatgaagtggcagaactaggtttctctgttaatccacga
cgtattgtcacatcatcgatggatgagatttgggactttattcaagctcttggacaggat
cgcgatcacttggcctatgacattgatggtgttgtcatcaaagtcaatagtttggctatg
caagaagaactcggttttacagttaaggcgccacgttgggctattgcttataaattcccg
gctgaggaaaaggaagcagagcttctctcagtggactggcaagtaggtcgtacgggtgta
gtaacgccgactgctaatttgactccagtgcaattagcggggacaacggttagtcgagcc
acccttcataatgtagattacattgccgaaaaagacattcgtatcggtgataccgtaatt
gtctacaaagctggtgatattatccctgctgtacttcgtgtagtagagagtaagcgtacg
acacaggagccgatggaagtaccgactcaatgtccatcttgtggcagtggtcttttacat
tttgaagatgaagttgccctacgatgtatcaatccttcttgccctgctcagatcaaggaa
ggcctgattcattttgcctctcgagatgccatgaacatcgcaggtatgggaccttcagtg
gttgaaaagctctttaaagctgaattggttaaagatgtggctgatatctatggcttgaac
agtcaggatttccttcaattggaaggtttcaaggaaaagtcggctgaaaaactttacgca
gccattcaagcatcaaaagaaaattctgcagagaaattgctctatggcttgggtattcgt
catgttggcgccaaagttagtaagcagttgctagaagcttttggaagtatacaagagtta
gccagtgcagatgtcgaggctattgctgctgtagatggtttaggagaggttattgccaag
tccatccagcgctattttgctaaggaggaggctcaagttcttatgaaagaactggaatcc
tatggcgttaatttgtcctatcttggacaaaaggtggcagatgatgctatcttatctggt
aagacagttgttttgacaggaaaattggagcatcttaaacgtagtgaagcaaaggcaaaa
ctagaagctctgggtgctaaggtgacaggttctgtctctaagaaaacagatttagtagtt
gctggtagtgatgccggaagtaagttggaaaaagcacaaagcctaggaattgaagtaaaa
gatgaggcttggttgctggatttatag
DBGET
integrated database retrieval system
