Spiribacter salinus: SPISAL_03265
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Entry
SPISAL_03265 CDS
T02685
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssal
Spiribacter salinus
Pathway
ssal03030
DNA replication
ssal03410
Base excision repair
ssal03420
Nucleotide excision repair
ssal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPISAL_03265
03410 Base excision repair
SPISAL_03265
03420 Nucleotide excision repair
SPISAL_03265
03430 Mismatch repair
SPISAL_03265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssal03032
]
SPISAL_03265
03400 DNA repair and recombination proteins [BR:
ssal03400
]
SPISAL_03265
Enzymes [BR:
ssal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SPISAL_03265
DNA replication proteins [BR:
ssal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SPISAL_03265
DNA repair and recombination proteins [BR:
ssal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SPISAL_03265
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPISAL_03265
MMR (mismatch excision repair)
DNA ligase
SPISAL_03265
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPISAL_03265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AGM40747
UniProt:
R4VJQ3
LinkDB
All DBs
Position
671320..673338
Genome browser
AA seq
672 aa
AA seq
DB search
MSEQASDLAQRVASLRREIEYHNHRYYVLDDPAVSDSEYDRLLQTLEALEAEHPELQTPY
SPTQRVGAEPLSAFGESAHDEPMLSLANAFEPADVEEFAQRLRQSLNVDEVTFAGEPKLD
GLSINLRYENGHLACAATRGDGEVGEDITVNARTIRSIPLILLTDAPPSRIEIRGEVVIR
RRDFEQLNAERLERGERAFANPRNAAAGSLRQLDPRITAKRPLTLFVFGIGASSEAIADT
HLGVLEQLADWGFRVNERVERLTGAAGLLDYHARLIAERDALDYEIDGAVYKVNDRATWR
ALGATARAPRWALAHKLPAREATTVVEQIIPSVGRTGVITPVAALEPVEVGGVTVTRATL
HNLDEVQRKDVREGDTVMVRRAGDVIPEVVNAVTAKRPAGAESWSMPSHCPICGSDVVRI
DDEAAHRCMGGLYCPAQRMGALMHFVSRRAMDIDGLGEKLIQQLVDTERVHTVVDLYHLR
QTDLLGLERMGQKSADNLVAAIDASRQTTLARFLYALGISQVGEVTARTLAQHFGRLEHL
MAADEDALLAVPDVGPVVAQSISQFFTQPHNREVIEGLLDAGVTWAEETPSTVGADDQRL
AGRTFVLTGALAAYTRDEARAAIESRGGKVTSSVSGQTDYLVAGDDPGSKRDRAEALGVT
ILDETAFRALLD
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgagcaagcgagcgacctggctcagcgggtggcgtcactgcgtcgcgagatcgaa
taccacaatcatcgttattacgtgctcgatgacccagcggtctcggatagtgaatacgat
cggttgctgcaaacgcttgaggcgcttgaggccgagcaccccgagttacaaaccccctat
tcccccacccagcgcgttggtgccgagccgttgtcagcgtttggtgagtcggctcatgat
gagcccatgctctcgctggcgaatgcattcgagccggctgatgtcgaggaattcgcccaa
cggcttcgccagtccctcaatgtggatgaagtgacctttgccggagagcccaaactcgac
gggctctcgatcaatttgcgttatgaaaacgggcatttggcgtgtgcggccacacgcggc
gatggtgaggttggcgaggacattacggtgaatgcgcggacgattcgcagcatcccgttg
attctgctaacggacgccccaccgtcccgaatcgaaattcgtggcgaggtcgtcatccgc
cggcgcgattttgagcagttgaatgccgagcgccttgagcggggcgagcgcgccttcgcc
aaccctcggaatgcggcggcaggcagcctccgccagcttgatccgcgaatcacggcgaag
cggccactgacattatttgtctttggtatcggcgcgagtagtgaggcgatcgccgatacg
catcttggggtgcttgagcagctggcggactggggtttccgggtaaacgagcgtgttgag
cgcctgaccggtgcggcgggtttgctggattatcatgcgcgtttgatcgcagagcgggat
gcgctcgactatgaaatcgatggcgccgtctacaaggttaacgaccgggccacgtggcgc
gcgctcggtgcaacggcccgggccccgcgctgggccctggcccacaagctgccggcccgg
gaagccaccacggtggtggaacagattatcccctcggttgggcgcaccggcgtaatcacc
cccgtcgccgcgctggaaccggttgaggtgggtggcgtaacggtcacccgcgcgacgttg
cacaatctcgatgaagtgcagcgtaaggatgttcgggaaggcgataccgtgatggtccgg
cgggccggtgacgtgatccccgaggtcgtgaatgcggtcacggcgaaacgccccgcgggc
gccgaatcctggtccatgcccagtcactgcccgatctgtgggtctgacgttgtccgcatt
gatgatgaggccgcgcatcgctgcatgggcgggctctactgccctgcgcagcgcatgggc
gcgctcatgcattttgtgtcccgccgtgccatggacatcgacggccttggcgagaagctg
atccagcagctcgtcgacaccgagcgggtccatacggtggtcgacctttaccacctccgt
cagaccgacctgttgggccttgagcgcatgggtcagaaatcggcggataacctggtggcc
gcgatcgacgcctcccggcagaccacgctagcgcgtttcctctatgcactcggaatcagt
caagttggcgaggtgacagcgcgcacgctggcacaacacttcggccggctcgagcacctg
atggccgcggatgaagacgcactgctggctgtgccggatgtcggtccggtggttgcgcag
tcgatcagccagtttttcacacaaccccataatcgtgaggtgattgagggactgctcgat
gcgggtgtgacctgggctgaggagacgccgagcaccgttggcgctgatgaccagcgcctg
gctggcaggacgtttgtactcacgggtgcccttgccgcctatacccgggatgaggcgcgc
gcggccattgagtcacggggcggcaaggtgaccagcagcgtatcaggccaaaccgattac
ctggtcgccggagacgacccgggctccaagcgagaccgggccgaggcgctgggtgtcacg
attctggatgagacggcttttcgggcactgctcgactga
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