Swingsia samuiensis: E3D00_00865
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Entry
E3D00_00865 CDS
T06080
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssam
Swingsia samuiensis
Pathway
ssam03030
DNA replication
ssam03410
Base excision repair
ssam03420
Nucleotide excision repair
ssam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E3D00_00865 (ligA)
03410 Base excision repair
E3D00_00865 (ligA)
03420 Nucleotide excision repair
E3D00_00865 (ligA)
03430 Mismatch repair
E3D00_00865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssam03032
]
E3D00_00865 (ligA)
03400 DNA repair and recombination proteins [BR:
ssam03400
]
E3D00_00865 (ligA)
Enzymes [BR:
ssam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E3D00_00865 (ligA)
DNA replication proteins [BR:
ssam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E3D00_00865 (ligA)
DNA repair and recombination proteins [BR:
ssam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E3D00_00865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E3D00_00865 (ligA)
MMR (mismatch excision repair)
DNA ligase
E3D00_00865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E3D00_00865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_ligase
Zn_ribbon_ISL3
TPD52
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QDH16283
UniProt:
A0A4Y6UFF6
LinkDB
All DBs
Position
185445..187481
Genome browser
AA seq
678 aa
AA seq
DB search
MSAITRHAELELLLARWDDAYYNQDDPEVSDAEYDEKRRELQKLEEEYPELKKTGQASQR
VGAELDATFTKHKHRTPMLSLDNVFNTEEFDGFISKASRFLGLNETETQALQFVAEPKID
GLSINLTYENRKFVRGTTRGNGLVGEDVTANLRTLHDIPTKLPDDAPDYIEIRGEIFLSK
ENFLKLNEKQEAQGIKPFANPRNAASGSLRQLDPKITESRPLSLFAYSQGFSSHPVSTTH
WDYLEQLKKWGFNVNPLSTLIKHPDEIAPYVERLAQERSALAYDIDGIVFKLNDISLHDR
LGFAGRAPRWAIAWKFPAEQAMTRLLKIEIQVGRTGALTPVAHLEPINVGGVIVSRATLH
NEDEINRKDVREGDLVKIQRAGDVIPQILEAVKTETDRKPPFHFPDHCPVCGSLAERVHG
EAVRRCTGGLTCEAQVVERLIHMVSRLAFDIDGLGERSIREFHAAGLILKPGDIFRLKQH
QEALEKREGWGQLSVQNLLNAIEERRILPLSRFIYGLGIRRIGERNAQLLARHYQTFENW
RSAMIAAQPESEERSSLGSIMGVGEAIADELVAFFSEEHNLEAIDDLRREMHHLEPEEAP
AEGHLSGQIIVFTGTLTTMARPEAKALAERLGAQVTDSVSKKTSLVVLGEKAGSKAKKAA
DLGIKTISEAEWRTLAGI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccattactcgtcatgcagaattagagctcctcttggcgcgttgggatgacgcc
tattataatcaagatgatcctgaagtttctgacgcagaatatgatgaaaaacgccgggaa
ctacaaaaattagaagaagaatatcctgagctaaagaaaacaggccaagccagccaacgc
gttggcgctgaactggacgccacctttaccaagcacaagcatcgcacaccgatgctttca
ttagataatgttttcaacacagaggaatttgacggttttatttccaaagcaagccgtttc
ctcgggctcaatgagacagaaacacaagcccttcaatttgttgccgaaccaaaaatagac
ggcctttcgattaatctcacctatgaaaaccgtaaattcgtaagaggtacaacacgcgga
aatggcctcgttggggaagatgtcacagccaacctccgcaccttacacgacatcccaaca
aaacttcccgatgatgcaccagactatattgagatccgaggtgaaatctttctctcgaaa
gaaaatttcttaaaactgaatgaaaagcaagaagctcaagggattaaaccttttgctaat
ccacgcaatgcagcatcaggttctttacgccagcttgacccaaaaattacagaaagccgt
cccctctctctctttgcatattcccaaggcttttcttctcaccccgtcagcacaacgcat
tgggactatctagaacagcttaaaaaatgggggtttaacgttaatcctctttccaccctc
attaaacatccagatgaaattgcaccttatgttgagcgtcttgcacaagaacgctcggct
cttgcttacgatattgatggaattgtttttaaactgaatgatattagcttgcatgatcgc
ctcggttttgcaggccgagctccacgatgggctatcgcgtggaaattccctgctgaacag
gccatgacccgactgctcaaaatcgaaattcaagttggccgaacaggcgctcttactcct
gttgcacatttggagcccattaacgtcggtggagtgatcgtctcacgggcaacgcttcac
aatgaagacgaaattaatcgtaaagatgtccgtgaaggtgatctcgttaaaatccaacgg
gcgggtgatgttatcccacaaatccttgaggccgttaaaactgagactgacagaaaacct
cccttccactttcctgatcattgccccgtttgcggctccttagcagaacgtgtgcatgga
gaagctgtccgccgttgcacgggagggttaacgtgtgaggcgcaagtggtagaacgtctc
attcacatggtttccagactggcctttgatattgatggccttggggaacgcagtatccgt
gaatttcatgccgctggtctcatcctaaaacccggtgatatttttcgtcttaaacagcat
caagaagctcttgagaaacgtgagggttgggggcaactctctgtccaaaatctgttaaat
gctattgaagaacgcaggatactccccctttcccgctttatttacggactaggtattcgc
cggattggtgagcgcaatgctcaactgctggcccgtcactaccaaacctttgagaactgg
cgcagcgctatgatcgccgcacaacctgaaagtgaagaacgctctagccttggctccatc
atgggcgttggcgaagctatagctgatgaactcgttgctttcttctccgaagagcataac
cttgaagccattgatgatttaaggcgcgaaatgcaccaccttgaaccggaagaagctcct
gctgaagggcatctttctgggcagatcattgtctttaccggaacactcacaaccatggca
cgccccgaagcaaaagctcttgccgaacgtttaggggcacaagtaacggatagtgtttca
aaaaaaacgtctttagtcgttttaggtgaaaaagcgggttcaaaagctaagaaagcagct
gacctcggtattaaaaccataagtgaagcagagtggagaactttggctgggatttaa
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