Sphingomonas sanxanigenens: NX02_27060
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Entry
NX02_27060 CDS
T03929
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssan
Sphingomonas sanxanigenens
Pathway
ssan03030
DNA replication
ssan03410
Base excision repair
ssan03420
Nucleotide excision repair
ssan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NX02_27060
03410 Base excision repair
NX02_27060
03420 Nucleotide excision repair
NX02_27060
03430 Mismatch repair
NX02_27060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssan03032
]
NX02_27060
03400 DNA repair and recombination proteins [BR:
ssan03400
]
NX02_27060
Enzymes [BR:
ssan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NX02_27060
DNA replication proteins [BR:
ssan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NX02_27060
DNA repair and recombination proteins [BR:
ssan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NX02_27060
NER (nucleotide excision repair)
GGR (global genome repair) factors
NX02_27060
MMR (mismatch excision repair)
DNA ligase
NX02_27060
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NX02_27060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
AHE56999
UniProt:
W0AGI7
LinkDB
All DBs
Position
complement(5670680..5672797)
Genome browser
AA seq
705 aa
AA seq
DB search
MTDEEAAAELAHLASEIARHNRLYHDQDAPEISDADYDGLIRRNAALEAEFPHLVRSDSP
SRLVGAQATGVLAKVTHARAMLSLENAFDDADVIEFVLRVRRFLALGEGDRVALTAEPKI
DGLSCSLRYEKGRLVLAATRGDGQVGEDVTPNVRTISDIPEQLPAGVPDVFEIRGEVYMA
KADFAALNARLLAEAGDPAKARQFANPRNAAAGSLRQKDAAITAARPLRFLAHGWGEVSA
LPAETQHGVMRAIENWGLPVSDLLVECVQVEAALAHYRRIEARRADLPFDIDGVVYKVDR
LDWQQRLGFVAKAPRWAIAHKFPAERAQTTLRAIDIQVGRTGKLTPVARLEPVTVGGVVV
TNATLHNADEIERLGARPGDRVVVQRAGDVIPQVVEVLTRDEERLAFLFPAQCPECGSDA
VREEGEVDIRCTGGLICPAQRVERLRHFVSRAALDIEGLGGTTIESFFRDGLIESPADIF
RLHEKRDELLQRERWAETSVDNLLKAIDDRRNAPLDRVLFALGIRHVGGVTARDLARRYR
SFEAFLGVVEAARAARSGLEPTPAEPERKFVIRRDKATVAAIDTPGVGPEVANALLDFFD
EAHNREVIDALRDAGLTPADVIHETRASEVSGKTVVFTGSLETMSRDEAKAQAEALGAKV
SGSVSAKTDLVVAGPGAGSKLKKASDLGIKVIDEAEWAKIVAAAG
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaggaagccgccgccgaactcgcccatctcgccagcgagatcgcccgccac
aaccgcctgtaccatgatcaggacgcgccagagatcagcgacgccgattatgacggcctg
atccggcgcaacgccgcgctggaggcggaatttccgcacctcgtccgcagcgattcgccc
tcgcggctggtcggcgcccaagcgaccggcgtgctcgccaaggtgacgcacgcgcgcgcg
atgctgagcctggagaacgcgttcgacgatgccgacgtcatcgaattcgtgctgcgcgtc
cgccgcttcctcgcgctcggcgagggcgatcgcgtcgcgctgaccgccgaacccaagatc
gacggcctctcctgttcgctgcgctacgagaagggcaggctggtgctggcggcgacgcgc
ggcgacggccaggtgggcgaggatgtgacccccaacgtccgcaccatatccgacattccg
gagcagttgccggccggtgtgcccgacgtcttcgagatccgcggcgaggtctacatggcc
aaggccgatttcgccgcgctcaacgcgcgcctgctggccgaggccggcgaccccgcgaag
gcacggcaattcgccaatccgcgcaacgccgccgccggatcgctgcgccagaaggatgcg
gcgatcaccgcggcccgcccgctgcgcttcctggcgcatggctggggtgaagtgtccgca
ctgcccgccgagacccagcatggcgtgatgcgcgcgatcgagaactgggggctgccggtg
agcgacctgctcgtcgaatgcgtccaggtggaagcggcgctcgcgcattaccggcgcatc
gaggcgcgccgcgccgacctgccgttcgacatcgacggcgtcgtctacaaggtcgatcgg
ctcgactggcagcagcggctgggcttcgtcgccaaggcaccacgctgggcgatcgcgcac
aaatttcccgccgagcgcgcgcagacgacgctgcgtgcgatcgacatccaggtcggccgc
accggcaagctcaccccggtcgcgcggctggagccggtgacggtgggcggcgtcgtcgtc
accaacgcgaccctgcacaatgccgacgagatcgagcggctcggcgcacggccgggcgac
cgcgtcgtcgtccagcgcgcgggcgacgtcatcccccaggtcgtcgaggtgctgacccgc
gacgaggagcgtctcgccttcctcttccccgcccagtgtcccgaatgtggctcggatgcg
gtgcgcgaggagggcgaggtcgacattcgctgcaccggcgggctgatctgccccgcgcag
cgcgtcgagcggctccgccacttcgtgtcgcgcgccgcgctcgacatcgagggactcggc
ggaacgacgatcgaaagcttcttccgcgacgggctgatcgaatcgccggcggacatcttc
cgcctgcacgaaaagcgtgacgaactgctgcagcgggagcgatgggcggaaacctcggtc
gataatctgctgaaggcgatcgacgaccgccgcaacgcaccgctcgaccgcgtgctgttc
gcgctcggcatccgccacgtcggcggcgtcaccgcacgcgacctcgcgcgccgttaccgc
tcgttcgaagcgttcctcggcgtggtcgaggccgcccgcgccgcacgcagcgggctggag
ccgacgccggccgaacccgagcgaaagttcgtgatccgccgcgacaaggccaccgtcgcc
gcgatcgacacccccggcgtcggccccgaagtcgccaacgcgctgctcgatttcttcgac
gaggcgcacaaccgcgaggtgatcgacgcgctgcgcgacgccggcctcacccccgcggac
gtgattcacgagacgcgcgcctccgaagtcagcggcaagaccgtggtgttcaccggctcg
ctggagacgatgagccgcgacgaggccaaggcgcaagccgaggcactgggcgcgaaggtc
tcgggatcggtctccgccaagaccgatctcgtcgtcgcggggccgggcgccggctccaag
ctcaagaaggcgagcgatctcggtatcaaggtgatcgacgaggcggagtgggcaaagatc
gtcgccgcggcggggtga
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