Serratia sarumanii: SSARUM_003431
Help
Entry
SSARUM_003431 CDS
T10280
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssar Serratia sarumanii
Pathway
ssar03030
DNA replication
ssar03410
Base excision repair
ssar03420
Nucleotide excision repair
ssar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SSARUM_003431 (ligA)
03410 Base excision repair
SSARUM_003431 (ligA)
03420 Nucleotide excision repair
SSARUM_003431 (ligA)
03430 Mismatch repair
SSARUM_003431 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssar03032
]
SSARUM_003431 (ligA)
03400 DNA repair and recombination proteins [BR:
ssar03400
]
SSARUM_003431 (ligA)
Enzymes [BR:
ssar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SSARUM_003431 (ligA)
DNA replication proteins [BR:
ssar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SSARUM_003431 (ligA)
DNA repair and recombination proteins [BR:
ssar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SSARUM_003431 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SSARUM_003431 (ligA)
MMR (mismatch excision repair)
DNA ligase
SSARUM_003431 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SSARUM_003431 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WGZ61682
LinkDB
All DBs
Position
complement(3603520..3605541)
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQQINQLRATLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAHPALITADSPTQ
RVGAAPLAAFNQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAG
FEQMNEEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHF
ERLMQFKAWGLPVSDRAQRRTGSEEVLAFYRQVEQDRAQLGFDIDGVVIKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVLEDRRPQDAREVVFPLHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIEQLVDKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLEKLFA
ADIEALKEVPDVGEVVAKHTRNFLDEALNQQVINELVGAEIGIHWPAPVVVVAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIA
VIDEAEMIRLLGD
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaatcaatcaactacgagccacattgcgccatcatgaatac
cagtatcatgtgctggatgcgccggaagtgccggatgcggaatatgaccgcctgatgcgc
gaactgcgcgagctggagagcgcgcatccggcgttgatcaccgccgattcgccgacccag
cgcgtgggcgccgcgccgctggcggcgtttaaccaggtgcgccacgaagtgccgatgctg
tcgctggacaacgtgttcgacgaagaaagcttcctggcgttttacaagcgcgtgcaggac
aggctcaaaagcagcgatccgctgaccttctgctgcgagctgaagctggacggcctggcg
gtcagcctgctgtacgaagacggtgagctggtgcgcgcggcgacgcgcggcgacggcacc
accggcgaaaacatcacctccaacgtgcgcaccattcgcgccattccgctgcgcctgacc
ggcgacaacatcccgcgccggctggaagtgcgcggggaagtgttcatgccgcaggctggt
tttgaacagatgaacgaagaagcccggcgcaaagacggcaaggtgttcgccaacccgcgc
aacgccgccgccggctcgctgcgccagctcgatccgcgcattaccgccaaacgcccgctg
accttcttctgctacggcgtcggcctgctggaaggcggcgaactgccgcgcagccacttt
gagcgcctgatgcagttcaaggcctggggcctgccggtcagcgatcgcgcccagcgccgc
accggcagcgaggaagtgctggcgttttatcgccaggtcgagcaggaccgcgcgcagctc
ggtttcgacatcgacggcgtggtgatcaagattgacgacatcgatctacaggaaacgctg
ggcttcgtggcgcgtgcgccgcgctgggcgacggcgttcaaattcccggcgcaggagcag
atcaccgtagtgcgcgaagtggagtttcaggttggccgcaccggcgcgattacgccggtg
gcgcgccttgagccggtgctggtggccggggtgaccgtcagcaacgccaccttgcacaac
gccgatgaaattgagcgtttggggctgcgcatcggcgatacggtgatcgtgcgccgcgcc
ggcgacgtgatcccgcaggtggtgggggtgctggaagaccgccggccacaggatgcgcgc
gaagtggtgttcccgctgcactgcccggtgtgcggctccgacgttgagcgcgtggaaggc
gaggcggtagcgcgctgcaccggtggtcttatctgcggcgcgcagcgcaaagaggcgttg
aagcacttcgtttcccgccgcgcgctggacgttgaaggcatgggcgacaagatcatcgag
cagctggtggacaaagagtacgtgaagaatccggccgatctgttccgcttgtccgccggc
attctgaccggcctggatcgcatggggccgaaatcggcgcagaatctggtcaatgcgctg
gagaaatccaagcagaccaccttcgcccgtttcctgtatgcgctgggcattcgcgaggtt
ggcgaggcgaccgccgccaacctggcggcgcatttcggatcgctcgagaagctgttcgcc
gccgatatcgaggcgctgaaagaggtgccggacgtcggcgaagtggtggccaaacacacc
cgcaatttccttgatgaagcgctcaatcaacaggtgatcaacgagctggtgggcgccgag
atcggcattcactggccggcgccggtggtggtggtcgccgaagagatagacagcccgttc
gctggcaaaaccgtggtgctgaccggctcgctgagccagctgtcgcgcgacgaggccaaa
gatcgcctgacggcgctgggcgccaaggtcagcggcagcgtgtcgaagaaaaccgatttg
gtgatcgccggcgaagcggccggttccaagctggcgaaggcgcaggagctgggtatcgcc
gtgatcgacgaagcggagatgatccgcctgctgggtgactga
DBGET
integrated database retrieval system
