Sus scrofa (pig): 100049662
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Entry
100049662 CDS
T01009
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X15
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc01524
Platinum drug resistance
ssc03440
Homologous recombination
ssc03460
Fanconi anemia pathway
ssc04120
Ubiquitin mediated proteolysis
ssc04151
PI3K-Akt signaling pathway
ssc05206
MicroRNAs in cancer
ssc05224
Breast cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100049662 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
100049662 (BRCA1)
03460 Fanconi anemia pathway
100049662 (BRCA1)
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100049662 (BRCA1)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100049662 (BRCA1)
09162 Cancer: specific types
05224 Breast cancer
100049662 (BRCA1)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
100049662 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssc01009
]
100049662 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssc04121
]
100049662 (BRCA1)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100049662 (BRCA1)
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100049662 (BRCA1)
Enzymes [BR:
ssc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100049662 (BRCA1)
Protein phosphatases and associated proteins [BR:
ssc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100049662 (BRCA1)
Ubiquitin system [BR:
ssc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100049662 (BRCA1)
Multi subunit type E3
BRCC complex
100049662 (BRCA1)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
100049662 (BRCA1)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
100049662 (BRCA1)
BRCA1-A complex
100049662 (BRCA1)
BRCA1-B complex
100049662 (BRCA1)
BRCA1-C complex
100049662 (BRCA1)
BRCA complex
100049662 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
100049662 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-RING_5
RING_XB3-XBAT31
BRCT_2
zf-RING_6
zf-Nse
zf-ANAPC11
zf-RING_10
zf-rbx1
Prok-RING_4
RTT107_BRCT_5
zf-RING_4
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
100049662
NCBI-ProteinID:
XP_003358078
Ensembl:
ENSSSCG00000022101
LinkDB
All DBs
Position
12:19788087..19854515
Genome browser
AA seq
759 aa
AA seq
DB search
MDLSVDHIEEVQNVLNAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ
CPLCKNDITKRSLQESTRFSQLVEELLKIIHAFELDTGLQFANNYNFSKKTENNSPEHLK
EEVSIIQSMGYRNRAKRLRQSDPEDPTLQETSLSAQLSNLGIVKPLRTQQQIQPQNKSVY
IELGSDSSEDTVNKANYCSGGDHGLLETTPQGAKAEAKKDACQFSEKDITNTEHHHSSNK
DLTATEKHATEKHPEKYEGETAFEYESETSFSEDCSGLSSQSAILTTQQRDTMQDNLLKL
QQEMAELEAVLEQHGSQPSHSSPSLIADSCAPEDLLNPEQNTSEKVLTSEKSSDYPITQN
PESLSADKFQVSLDRSTSKNKESGMERSSTSKSQLSDSRWYMHSPSRSLQNRSCPSQEEL
IPVIDLEEQQLTTSEAQDSVKQSYLPRQDLEGTPYLKSGISLFSDDPESDPSENRAPESA
HVFSTPLSTSALKLPQFQVKESAKSPAAAHTTNTAGYNVRQESMSRKKPEVISSTKTNSR
RISIVASGLTPKEYTLVQKFARKHYITLTNLITEETTHVIMKTDAEFVCERTLKYFLGIA
GGKWVVSYFWVTQSIKEGKMLDEHDFEVRGDVVNGRNHRGPKRARESQDRKIFKGLEICC
CGPFTNMPTDQLEWMVLLCGASVVKDPSSFTFRQGTRPVVVVQPDAWPEDSGFHVIGQMC
EAPVVTREWVLDSVALYQCQELDTYLIPQVPQSCCRPCT
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggatttatctgtggatcacattgaagaagtacaaaatgtccttaatgctatgcagaaa
atcttagagtgtccaatctgtctggagttgatcaaagagcctgtttccacaaagtgtgac
cacatattttgcaaattttgtatgctgaaacttctcaaccagaagaaagggccttcacag
tgtcctttgtgtaagaatgatataaccaaaagaagcctacaagaaagtacaagatttagt
cagctcgttgaagagctcttgaagatcattcatgcttttgagcttgacacaggattgcag
tttgcaaacaattataacttttcaaaaaaaacggaaaataactctcctgagcatctaaag
gaagaagtttctatcatccaaagtatggggtatcgaaaccgggccaaaagacttcgacag
agtgaccctgaagatcctacgttgcaggaaaccagtcttagtgctcaactctctaacctt
ggcattgtgaaacctctgaggacacagcagcaaatacaacctcaaaataagtctgtctac
attgaattgggatctgattcttctgaagatacagttaataaggcaaattattgcagtggg
ggagaccatggattgttagaaaccacccctcaaggagccaaggctgaagcaaaaaaggat
gcttgtcagttttctgagaaggacataacaaatactgaacatcatcattccagtaataaa
gatttgaccgctactgagaagcatgcaactgagaagcatccagaaaaatatgagggtgaa
acagcattcgagtatgagagcgaaacaagcttctctgaagactgctcggggctgtcctct
cagagcgctatcttaaccactcagcagagggataccatgcaagataacctgctaaagctc
cagcaggaaatggccgaactggaagctgtgttagagcagcatgggagccagccttctcat
agctccccttccctcatagccgattcctgtgcccctgaggacttgctaaatccggaacaa
aacacatcagaaaaagtattaacttcagaaaaaagtagtgactatcctataacccagaat
ccagaaagcctttctgctgacaagtttcaagtatctctggatcgttccaccagtaaaaat
aaagaatcaggaatggaaagatcttccacttctaaatcccagttgtcagatagtaggtgg
tatatgcacagcccctctagaagtcttcagaacagaagctgcccatctcaggaggagctc
attcccgttattgatttggaggagcaacagctgactacatctgaggcccaagattcagtg
aagcagtcttatttgccaagacaagatctagagggaaccccttacctaaaatctggaatc
agcctcttctctgacgaccctgagtctgatccctctgaaaacagagccccagagtcagct
cacgttttcagcacgccactctcaacttctgctctgaaattaccccaatttcaagttaaa
gaatctgccaagagtccagctgctgctcatactactaatactgcagggtataatgtgagg
caagaaagtatgagcaggaagaagccagaagtgatatcttcaacaaaaacaaacagcaga
agaatatctattgtggcatcaggcttgactccaaaagaatatacgctggtacagaagttt
gccagaaaacattacatcactttaactaatctaattactgaagagactactcatgtcatt
atgaaaacagatgctgagtttgtgtgtgaacggacactgaaatattttctgggaattgca
ggaggaaaatgggtagttagctatttttgggtgacccagtctattaaagaaggaaagatg
ctggatgagcatgattttgaagtcagaggagatgttgtcaatggaaggaaccaccgaggt
ccaaagcgagcaagagaatcccaggacagaaagatcttcaagggcctagaaatttgttgc
tgtggaccctttaccaacatgcccacagatcaactagagtggatggtgctcctctgtggg
gcttctgtggtgaaggacccctcatcattcaccttccgccagggtactcgcccagtcgtg
gtcgtgcagccggacgcctggccagaggacagtggcttccatgtgatcgggcagatgtgt
gaagcacctgtggtgactcgagagtgggtgttggacagcgtagccctctaccagtgccag
gagctggacacctacctgataccccaggtcccccagagctgctgccggccatgtacctag
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