Sus scrofa (pig): 100157920
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Entry
100157920 CDS
T01009
Symbol
SETDB1
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1 isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc00310
Lysine degradation
ssc01100
Metabolic pathways
ssc04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
100157920 (SETDB1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
100157920 (SETDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssc03036
]
100157920 (SETDB1)
Enzymes [BR:
ssc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
100157920 (SETDB1)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
100157920 (SETDB1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
100157920 (SETDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5604
Tudor_4
Tudor_5
MBD
SET
Pre-SET
Chromo_MORC2_6th
DUF4537
Chromo
Motif
Other DBs
NCBI-GeneID:
100157920
NCBI-ProteinID:
XP_005663543
Ensembl:
ENSSSCG00000006645
UniProt:
A0A8D1PZT6
F1SS95
LinkDB
All DBs
Position
4:complement(98259801..98293238)
Genome browser
AA seq
1292 aa
AA seq
DB search
MSSLPGCIGLDAAAAAMESEEIAELQQAVVEELGISMEELRQFIDEELEKMDCVQQRKKQ
LAELETWVIQKESEVAHVDQLFDDASKAVTNCESLVKDFYSKLGLQYRDSSSEDEASRPT
EIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDL
HKGTLSQMTGELTKDGDLTVGMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKS
LLSGNHIAYDHHPPVDKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKNRFLIFFDDG
YASYVTESELYPICRPLKKTWEDIEDISCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEG
TWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASALEKKQGGQLRTR
PNMGAVRSKGPVVQYTQDLTSTGTQFKPLEPPQPTASPVPPAPAPPGPPLSPQAGDNESL
ESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSPALSETAPVGKPGINQTYRSPLGSTTSA
PTPPAPPAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRVRPMRNEQYRGKNP
LLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFC
LDPYVLVDRKFQPYKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFI
NTGPEFLVGCDCKDGCRDKSKCACHQLTIQATACTPGGQINPNSGYQYKRLEECLPTGVY
ECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTD
DFADKEGLEMGDEYFANLDHIESVENFKEGYESDAPCSSDSSGVDLKDQEDGNSGTEDPE
ESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSEMPSKDSRPPDLGPPHIPV
SPSIPVGSCNPPSSEETPKNKVASWLSCNSVNEGGFADSDSRSSFKTSEGGEGRAGGSRG
EAEKASSSGLGFKDEGDIKQAKKEDPDDRSKMSIVTESSRNYGYNPSPVKIEGLRRPPSK
TSMHQSRRLLAFAQSNPDDILTLSSSTESEGESGTSRKPTAGQTSATAVDSDDIQTISSG
SEGDDFEDKKNMSGPVKRQVAVKSTRGFALKSTHGIAIKSTNMASVEKGESAPVRKNTRQ
FYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGT
ELTWDYNYEVGSVEGKELLCCCGAIECRGRLL
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccctccctgggtgcattggtttggatgcagcagcagctgcaatggagtctgaa
gaaattgcagagctgcaacaggcagtcgttgaggaactgggtatctctatggaagaactt
cgacagttcattgatgaagaattggaaaagatggactgtgtacagcagcgcaagaagcaa
ctagcagagttggagacttgggtaatacagaaggaatccgaggtggcccatgttgaccag
ctctttgatgatgcatccaaggcagtgactaattgtgagtctttggtgaaggacttttat
tctaaactgggactacaataccgagacagtagctctgaggatgaagcttcccggcctaca
gaaataattgagattcctgatgaagatgatgatgtcctcagtattgattcaggggatgct
gggagcagaactccaaaagatcagaagcttcgtgaagctatggctgccttaagaaagtcg
gctcaagatgtccagaagttcatggatgccgtcaacaagaagagcagttcccaggatctt
cacaaaggaaccttgagtcagatgactggagagttgaccaaagatggtgacctgacagtc
ggcatgcgcatactgggcaagaagagaactaagacatggcacaaaggcacccttattgcc
atccagacagttgggccaggaaagaagtacaaggtgaaatttgacaacaaaggaaagagt
ctactgtcagggaaccatattgcctatgaccaccaccctcctgttgacaagctgtatgtg
ggcagtcgagtagtggccaaatacaaagatgggaatcaggtctggctctatgctggcatt
gtagctgagacaccaaacgtcaaaaacaagaacaggtttctcattttctttgatgatggc
tacgcttcctatgttaccgagtctgaactgtatcccatttgccggccactgaaaaagact
tgggaggacatagaagacatctcctgccgagacttcatagaggagtatatcactgcttac
cccaaccgccccatggtgctgctcaagagtggccagctcatcaagactgagtgggaaggc
acatggtggaagtcccgagtcgaggaggtggacggcagcctagtcaggatcctcttcctg
gatgacaaaaggtgtgaatggatctatcgaggctctacacggctggagcccatgttcagc
atgaagacatcttcagcctctgcactggagaagaagcaagggggacagctcaggacacgt
ccaaatatgggtgctgtgaggagcaaaggtcctgtggtccagtatactcaggatctgacc
agtactggaacccagtttaagccactggagcccccacagcctacagcctcacctgtccca
cctgcccccgccccaccaggtccacctctgtccccacaggcaggtgacaatgaaagcttg
gaaagccagcttgcccaatctcgaaagcaggtagccaaaaaaagcacatccttccgacca
ggatctgtgggctctggtcattcctcccctacatcccctgcactcagtgaaactgcccct
gttgggaaaccagggatcaatcagacatatagatcacctttaggctcaacaacctctgcc
ccaacacccccagctcccccggcacccccagccttccatggcatgctggagcgggcccct
gcagagccctcctaccgcgcccccatggagaagcttttctacttacctcacgtgtgcagc
tatacttgtctgtctcgagtcagacctatgagaaatgagcagtatcggggcaagaaccct
ctcctagtcccactactgtatgacttccggaggatgacagcccggcgccgagttaaccgg
aagatgggctttcatgttatctataagacaccctgtggcctctgccttcggacaatgcag
gaaattgagcgctacctttttgagactggctgtgacttcctcttcctggagatgttctgt
ttggatccatatgttcttgtggaccgaaagtttcagccctataagcctttttactatatt
ttggacatcacctatgggaaggaagatgttcccctctcctgtgtcaatgagattgacaca
actcccccaccccaagtggcctacagcaaggaacgaatcccgggcaagggtgttttcatt
aacacaggtcctgaatttctggttggctgtgactgcaaagatgggtgccgcgacaaatcc
aagtgtgcctgccatcagctaactatccaggctacagcctgcaccccaggtggccaaatc
aaccctaattctggctaccagtacaagagactagaagagtgtctgcccacaggagtttat
gagtgtaacaaacgctgcaaatgtgatccaaacatgtgcacaaaccggttggtgcaacat
ggactgcaggttcggctgcagctcttcaagacccagaacaagggctggggtatccgctgc
ttggatgacattgccaaaggctcctttgtctgtatttatgcaggcaaaatcctgacagat
gactttgctgacaaggagggcctggaaatgggtgatgagtactttgccaatctggaccat
attgagagtgtggagaacttcaaggaaggatatgagagtgatgccccctgttcctctgac
agcagtggtgtagacttgaaggatcaggaagatggcaacagcggtaccgaggacccggaa
gagtccaacgacgatagctcggatgataacttctgtaaggatgaggacttcagcaccagc
tcagtgtggcgaagctatgctacccggcggcagacccggggccagaaggagaatggatta
tctgagatgccgtccaaggactctcgtcccccagacctcgggccaccacatattcctgtc
tccccatcaatccctgtaggtagctgcaatccaccttcttctgaagagacacccaagaac
aaggtggcttcgtggttgagctgcaatagtgtcaatgaaggtggctttgctgactctgat
agccgttcatccttcaagactagtgaaggtggagaaggccgggctgggggaagcagaggg
gaggctgagaaggcttccagctcagggctgggcttcaaggatgagggagacatcaagcag
gccaagaaagaggaccctgatgaccgaagcaagatgtcaatagttactgaaagctctcga
aattatggttacaatccttctcctgtgaagattgaaggacttcgccgcccaccaagtaag
actagtatgcatcagagccgacgactcttggcctttgctcagtcgaaccctgatgatatc
ctgacactgtccagcagcacagaaagtgagggggaaagtgggaccagccgaaagcccact
gctggtcagacttcagccacagccgttgacagtgatgatatccagaccatctcgtctggc
tctgaaggggatgactttgaggacaagaagaacatgtctggtccagtgaagcgccaagtg
gcagttaaatcaacccggggttttgctctcaaatcaacccatgggattgccattaaatca
accaacatggcatccgtggaaaagggggagagcgcgcctgttcgtaagaacacacgccag
ttctacgatggtgaggagtcttgctacatcatcgacgccaagcttgaaggcaacctgggc
cgctacctcaatcacagttgcagccccaacctgtttgtccagaatgtcttcgtggatact
catgatcttcgcttcccatgggtggccttctttgccagcaagagaattcgagctgggaca
gaacttacctgggactacaactatgaggtgggcagtgtggaaggcaaggagctgctttgc
tgctgtggagccatcgaatgcagaggccgtcttctctaa
DBGET
integrated database retrieval system
