Sus scrofa (pig): 100271728
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Entry
100271728 CDS
T01009
Symbol
TRPC6
Name
(RefSeq) short transient receptor potential channel 6 isoform X1
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04022
cGMP-PKG signaling pathway
ssc04360
Axon guidance
ssc04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04022 cGMP-PKG signaling pathway
100271728 (TRPC6)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
100271728 (TRPC6)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
100271728 (TRPC6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssc04040
]
100271728 (TRPC6)
Ion channels [BR:
ssc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100271728 (TRPC6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
YVC1_C
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
Motif
Other DBs
NCBI-GeneID:
100271728
NCBI-ProteinID:
XP_003357304
Ensembl:
ENSSSCG00000024022
UniProt:
I3LUU3
LinkDB
All DBs
Position
9:complement(32332768..32439184)
Genome browser
AA seq
931 aa
AA seq
DB search
MNQSPAFGPRRGGSPRVAAGAGARRNESQDYLLMDSELGDDGYPQPPLLPYGYYPSFRGS
DNRLAHRRQTVLREKGRRLANRGPAYMFNDHSTSLSIEEERFLDAAEYGNIPVVRKMLEE
CLSLNVNCVDYMGQNALQLAVANEHLEITELLLKKENLSRVGDALLLAISKGYVRIVEAI
LSHPAFAEGKRLATSPSQSELQQDDFYAYDEDGTRFSHDVTPIILAAHCQEFEIVHTLLR
KGARIERPHDYFCKCSECNQKQKHDSFSHSRSRINAYKGLASPAYLSLSSEDPVMTALEL
SNELAVLANIEKEFKNDYKKLSMQCKDFVVGLLDLCRNTEEVEAILNGDVEVHHSGDHGR
PNLSRLKLAIKYEVKKFVAHPNCQQQLLSIWYENLSGLRQQTMAVKFLVVLAVAIGLPFL
ALIYWFAPCSKMGKIMRGPFMKFVAHAASFTIFLGLLVMNAADRFEGTKLLPNETSTDNA
KQLFRMKTSCFSWMEMLIISWVIGMIWAECKEIWTQGPKEYLFELWNMLDFGMLAIFAAS
FIARFMAFWHASKAQSIIDANDTLKDLTKVTLGDNVKYYNLARIKWDPSDPQIISEGLYA
IAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNLYSYYI
GAKQNEAFTTVEESFKTLFWAIFGLSEVKSVVINYNHKFIENIGYVLYGVYNVTMVIVLL
NMLIAMINSSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSLFYLLLRL
KKWISELFQGHKKGFQEDAEMNKRNEEKKFGILGSHEDLSKLSLDKKQFGHSKQSSIRSS
EDFHLNNFNNPPRQYQKIMKRLIKRYVLQAQIDKESDEVNEGELKEIKQDISSLRYELLE
EKSQNSEDLAELIRKLGEKLSMRPNQEESNR
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagagcccggcgttcgggccccggaggggcggctctccccgggtcgcggccggg
gccggcgcgcggcggaacgagagccaggattacctgctcatggactcggagttgggagac
gacggctacccgcagcccccgctgcttccctacggttactaccccagcttccgaggcagt
gacaatagactggcgcaccggcggcagacagttctccgtgagaaagggagaaggctagct
aaccgaggcccagcatacatgtttaatgatcactcaacaagcctatctattgaggaggaa
cgctttttagatgcagctgaatatggcaacatcccagtggtgaggaagatgttagaagaa
tgcctctcactcaatgttaactgtgtggattacatgggccagaacgccctgcagctggct
gtggccaacgagcatctggaaattacagagcttctccttaagaaagaaaacctctctcgg
gttggggatgctttgcttttagctattagtaaaggttatgtgcggattgtggaagccatt
ctcagtcatccagcttttgctgaaggcaagcgattagcaaccagccccagtcagtctgaa
ctccagcaagatgatttttatgcctatgatgaagatggaacgcggttctcccatgatgtg
actccaatcatcctggctgcccactgccaggagtttgaaattgtgcacaccctcttgcgg
aagggtgctcggattgaacggcctcatgactatttctgcaagtgcagcgaatgcaaccag
aaacagaagcatgactccttcagccactccagatctagaattaatgcctacaaaggcctg
gcaagcccagcttacctgtcattgtctagtgaagatccagtcatgacagctttggagctt
agcaatgagctggcagtgctggccaacattgagaaagagttcaagaatgactacaaaaaa
ctatcaatgcagtgcaaagattttgtggttggactccttgatctgtgcagaaataccgaa
gaagtagaggccattctgaatggggatgttgaagtacaccacagcggagatcacggtcgt
cccaatctcagccgtttaaaacttgccattaaatatgaagtgaaaaaatttgtagctcac
cccaactgtcaacagcagcttctctccatatggtatgagaacctttccggtttgcggcag
cagaccatggcagtcaagttccttgtggtcctcgccgttgccatcggactgcccttcctg
gctctcatttactggtttgctccatgcagcaagatggggaagataatgcgtggaccattc
atgaagtttgtagcacacgccgcctccttcaccatttttctgggactgctagtcatgaat
gcagctgacagatttgaaggcaccaaactccttcctaatgaaaccagcacagataatgca
aaacagctgttcaggatgaaaacatcctgcttctcttggatggagatgctcattatatcc
tgggtaataggcatgatatgggcagaatgtaaagaaatttggactcaaggccccaaggag
tacttgtttgagttgtggaatatgcttgattttggaatgttggcaatctttgcagcatca
ttcattgcaagattcatggcattttggcatgcttccaaagcccagagcatcattgatgca
aatgatactttgaaggatttgacaaaagtcacattgggagacaatgtgaaatactacaac
ttggccaggataaagtgggacccctctgatcctcaaattatatctgaaggtctttatgca
attgctgtagttttaagtttctccagaatagcctacattttaccagcaaatgaaagcttt
ggacctctgcagatatctcttggaagaacagtaaaagacatcttcaagttcatggtcata
ttcatcatggtatttgtggcctttatgattggaatgttcaatctctactcctactatatt
ggtgcaaaacaaaatgaagccttcacaacagtggaggagagttttaagacactattttgg
gctatattcggactttctgaagtgaaatcagtggtcatcaactataatcacaaattcatt
gaaaacatcggttatgttctttacggagtctacaatgttacgatggtcattgttttgcta
aacatgttaattgcaatgatcaacagttcgttccaggaaatagaggatgacgctgatgtg
gaatggaaatttgcaagggccaaactttggttctcctactttgaggaaggaagaactctt
cctgttcccttcaacctggtgccaagtccaaagtccctgttttatctcttactgaggctt
aaaaaatggatttccgagttgttccagggccataaaaagggtttccaggaggatgcagaa
atgaacaagagaaatgaagaaaagaaatttggaattttgggaagtcatgaagacctttca
aaactatcacttgacaaaaaacagtttgggcacagtaaacaatcaagtataaggagctcg
gaagatttccatttaaataatttcaataatcctccaagacaatatcagaaaataatgaag
aggctcattaaaagatatgtattacaagcccagatagataaggagagtgacgaagtgaat
gaaggggaactgaaggaaattaaacaagacatctcaagtctccgctatgaactccttgaa
gaaaaatctcagaattcagaggacctggcagaacttattagaaaacttggggagaaatta
tcaatgaggccaaatcaagaggaaagcaatagataa
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