Sus scrofa (pig): 100271728
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Entry
100271728 CDS
T01009
Symbol
TRPC6
Name
(RefSeq) short transient receptor potential channel 6 isoform X1
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04022
cGMP-PKG signaling pathway
ssc04360
Axon guidance
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04022 cGMP-PKG signaling pathway
100271728 (TRPC6)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
100271728 (TRPC6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssc04040
]
100271728 (TRPC6)
Ion channels [BR:
ssc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100271728 (TRPC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
Motif
Other DBs
NCBI-GeneID:
100271728
NCBI-ProteinID:
XP_003357304
Ensembl:
ENSSSCG00000024022
UniProt:
A0A8D1IRE0
I3LUU3
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All DBs
Position
9:complement(32332768..32439184)
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AA seq
931 aa
AA seq
DB search
MNQSPAFGPRRGGSPRVAAGAGARRNESQDYLLMDSELGDDGYPQPPLLPYGYYPSFRGS
DNRLAHRRQTVLREKGRRLANRGPAYMFNDHSTSLSIEEERFLDAAEYGNIPVVRKMLEE
CLSLNVNCVDYMGQNALQLAVANEHLEITELLLKKENLSRVGDALLLAISKGYVRIVEAI
LSHPAFAEGKRLATSPSQSELQQDDFYAYDEDGTRFSHDVTPIILAAHCQEFEIVHTLLR
KGARIERPHDYFCKCSECNQKQKHDSFSHSRSRINAYKGLASPAYLSLSSEDPVMTALEL
SNELAVLANIEKEFKNDYKKLSMQCKDFVVGLLDLCRNTEEVEAILNGDVEVHHSGDHGR
PNLSRLKLAIKYEVKKFVAHPNCQQQLLSIWYENLSGLRQQTMAVKFLVVLAVAIGLPFL
ALIYWFAPCSKMGKIMRGPFMKFVAHAASFTIFLGLLVMNAADRFEGTKLLPNETSTDNA
KQLFRMKTSCFSWMEMLIISWVIGMIWAECKEIWTQGPKEYLFELWNMLDFGMLAIFAAS
FIARFMAFWHASKAQSIIDANDTLKDLTKVTLGDNVKYYNLARIKWDPSDPQIISEGLYA
IAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNLYSYYI
GAKQNEAFTTVEESFKTLFWAIFGLSEVKSVVINYNHKFIENIGYVLYGVYNVTMVIVLL
NMLIAMINSSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSLFYLLLRL
KKWISELFQGHKKGFQEDAEMNKRNEEKKFGILGSHEDLSKLSLDKKQFGHSKQSSIRSS
EDFHLNNFNNPPRQYQKIMKRLIKRYVLQAQIDKESDEVNEGELKEIKQDISSLRYELLE
EKSQNSEDLAELIRKLGEKLSMRPNQEESNR
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagagcccggcgttcgggccccggaggggcggctctccccgggtcgcggccggg
gccggcgcgcggcggaacgagagccaggattacctgctcatggactcggagttgggagac
gacggctacccgcagcccccgctgcttccctacggttactaccccagcttccgaggcagt
gacaatagactggcgcaccggcggcagacagttctccgtgagaaagggagaaggctagct
aaccgaggcccagcatacatgtttaatgatcactcaacaagcctatctattgaggaggaa
cgctttttagatgcagctgaatatggcaacatcccagtggtgaggaagatgttagaagaa
tgcctctcactcaatgttaactgtgtggattacatgggccagaacgccctgcagctggct
gtggccaacgagcatctggaaattacagagcttctccttaagaaagaaaacctctctcgg
gttggggatgctttgcttttagctattagtaaaggttatgtgcggattgtggaagccatt
ctcagtcatccagcttttgctgaaggcaagcgattagcaaccagccccagtcagtctgaa
ctccagcaagatgatttttatgcctatgatgaagatggaacgcggttctcccatgatgtg
actccaatcatcctggctgcccactgccaggagtttgaaattgtgcacaccctcttgcgg
aagggtgctcggattgaacggcctcatgactatttctgcaagtgcagcgaatgcaaccag
aaacagaagcatgactccttcagccactccagatctagaattaatgcctacaaaggcctg
gcaagcccagcttacctgtcattgtctagtgaagatccagtcatgacagctttggagctt
agcaatgagctggcagtgctggccaacattgagaaagagttcaagaatgactacaaaaaa
ctatcaatgcagtgcaaagattttgtggttggactccttgatctgtgcagaaataccgaa
gaagtagaggccattctgaatggggatgttgaagtacaccacagcggagatcacggtcgt
cccaatctcagccgtttaaaacttgccattaaatatgaagtgaaaaaatttgtagctcac
cccaactgtcaacagcagcttctctccatatggtatgagaacctttccggtttgcggcag
cagaccatggcagtcaagttccttgtggtcctcgccgttgccatcggactgcccttcctg
gctctcatttactggtttgctccatgcagcaagatggggaagataatgcgtggaccattc
atgaagtttgtagcacacgccgcctccttcaccatttttctgggactgctagtcatgaat
gcagctgacagatttgaaggcaccaaactccttcctaatgaaaccagcacagataatgca
aaacagctgttcaggatgaaaacatcctgcttctcttggatggagatgctcattatatcc
tgggtaataggcatgatatgggcagaatgtaaagaaatttggactcaaggccccaaggag
tacttgtttgagttgtggaatatgcttgattttggaatgttggcaatctttgcagcatca
ttcattgcaagattcatggcattttggcatgcttccaaagcccagagcatcattgatgca
aatgatactttgaaggatttgacaaaagtcacattgggagacaatgtgaaatactacaac
ttggccaggataaagtgggacccctctgatcctcaaattatatctgaaggtctttatgca
attgctgtagttttaagtttctccagaatagcctacattttaccagcaaatgaaagcttt
ggacctctgcagatatctcttggaagaacagtaaaagacatcttcaagttcatggtcata
ttcatcatggtatttgtggcctttatgattggaatgttcaatctctactcctactatatt
ggtgcaaaacaaaatgaagccttcacaacagtggaggagagttttaagacactattttgg
gctatattcggactttctgaagtgaaatcagtggtcatcaactataatcacaaattcatt
gaaaacatcggttatgttctttacggagtctacaatgttacgatggtcattgttttgcta
aacatgttaattgcaatgatcaacagttcgttccaggaaatagaggatgacgctgatgtg
gaatggaaatttgcaagggccaaactttggttctcctactttgaggaaggaagaactctt
cctgttcccttcaacctggtgccaagtccaaagtccctgttttatctcttactgaggctt
aaaaaatggatttccgagttgttccagggccataaaaagggtttccaggaggatgcagaa
atgaacaagagaaatgaagaaaagaaatttggaattttgggaagtcatgaagacctttca
aaactatcacttgacaaaaaacagtttgggcacagtaaacaatcaagtataaggagctcg
gaagatttccatttaaataatttcaataatcctccaagacaatatcagaaaataatgaag
aggctcattaaaagatatgtattacaagcccagatagataaggagagtgacgaagtgaat
gaaggggaactgaaggaaattaaacaagacatctcaagtctccgctatgaactccttgaa
gaaaaatctcagaattcagaggacctggcagaacttattagaaaacttggggagaaatta
tcaatgaggccaaatcaagaggaaagcaatagataa
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