Sus scrofa (pig): 100512074
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Entry
100512074 CDS
T01009
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
100512074 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100512074 (KDM2B)
04121 Ubiquitin system [BR:
ssc04121
]
100512074 (KDM2B)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100512074 (KDM2B)
Enzymes [BR:
ssc01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
100512074 (KDM2B)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
100512074 (KDM2B)
Ubiquitin system [BR:
ssc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
100512074 (KDM2B)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
100512074 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
100512074 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
100512074
NCBI-ProteinID:
XP_020929079
Ensembl:
ENSSSCG00000009811
ENSSSCG00000009812
ENSSSCG00000029803
UniProt:
A0A480T4H4
LinkDB
All DBs
Position
14:31057121..31203093
Genome browser
AA seq
1311 aa
AA seq
DB search
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLIFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRESMLI
DAPRKPSIDGFSSDSWLEMEEESCEQQPQEEEKEEEEEEEEEGTDKTPKPPTDGPASPTS
IPSEDQEAPGKKPKAPAMRFLKRTLSNESEDSVKSATMPIDYPKTPTGSPATEVSAKWTH
LTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPSLAITGVP
VVTWPKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECH
FCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMEC
SICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPG
SLLKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPPDGILRRKSDDVHLRRKRK
YEKPQELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLF
RKKRRSWKNSEDRMALANKPLRRFKQEPEDDLPEAPPKTRESDHSRSSSPTAGPSTEGTE
GSEEKKKVKMRRKRRLPNKELSKELSKELNQEIQKTESSLANENHQPIKSEPESENEEPK
RPLGLCERPHRFSKGLNGTPRELRHQLGPGLRSPPRVISRPPPSVSPPKCIQMERHVIRP
PPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHRDLCVCMRVCRTWNRWCCDKRLWTRI
DLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVS
ALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDI
TDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQC
LSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgcccgattgaccgccagagatacgac
gagaacgaggacttatcggacgtggaggagatcgtcagcgtccgcggcttcagcctggag
gagaagctgcgcagccagctgtaccagggggacttcgtgcacgccatggagggcaaagat
ttcaactatgagtacgtgcagagagaagctctcagagttcccctgatatttcgagaaaag
gatggacttggaattaagatgcctgaccctgatttcacagtccgagatgtcaaactccta
gtgggcagccggcggctggtggatgtgatggacgtgaacacccagaaaggcacggagatg
agcatgtcgcagtttgtgcggtactatgagacgcccgaggcccagcgggacaagttgtat
aacgtcatcagccttgagttcagccacaccaagctggagcacttggtcaagcgtcccacc
gtggtggacctggtggactgggtggacaacatgtggcctcagcacttgaaggagaagcag
acggaagccacaaacgccattgcggagatgaagtacccgaaagtgaagaagtactgtctg
atgagcgtgaaaggttgtttcactgacttccacatcgactttggaggcacttccgtttgg
taccatgttttccggggcgggaagatattttggctgattcctccaaccttgcacaattta
gcgctgtacgaggagtgggtgctctcaggcaaacagagtgacatcttcctgggagaccgt
gtggagcgatgccaaagaattgagctgaagcagggctacacatttttcatcccttccggc
tggatccatgcagtctacacccccgtagactccctggtattcggcggaaatatcctgcac
agcttcaacgtgcccatgcagctgcggatctacgagattgaggacagaacacgggtgcag
cccaaattccgttatcccttctactatgagatgtgctggtatgtcttggagagatacgtg
tactgtgtgacccagcggtcctacctcactcaggaataccagagagaatcaatgcttatt
gatgccccaagaaagcccagcatagacggcttctcatcagattcctggctggagatggag
gaagagtcctgtgagcagcagccccaggaagaggagaaggaggaagaggaagaggaagag
gaggagggcacagataagacgcccaaaccacccactgatggccctgcctcgcccaccagc
atcccctcagaggaccaggaggcccctgggaagaagcccaaagcccctgccatgcggttc
ctcaaaagaactttgtcgaacgagtcggaggacagtgtgaagtccgccacgatgcccata
gactaccccaagacgcccaccggctctccggccactgaggtctctgccaaatggacccac
ctcaccgagtttgagctgaagggcctgaaagctctggtggagaaacttgaatccctccct
gagaataagaagtgtgtcccagagggcatcgaggacccccaggcactcctggagggcgtg
aagaatgtcctgaaggagcatgcggacgacgatcccagtctggccatcactggggtccct
gtagtcacttggccaaagaagactccaaagaaccgagcggtgggtcggcccaaggggaag
ttgggcccggcctccgccgtgaagttggccgccaaccggaccacggcgggagctcgccga
cgccggacgcgatgccgcaagtgcgaggcctgcctgcggacggagtgcggagagtgccac
ttctgcaaggacatgaagaagttcgggggccccgggcggatgaagcagagctgcatcatg
cggcagtgcattgcgccagtgctgccccataccgccgtgtgcctggtgtgtggcgaggca
gggaaagaggacacggtggaagaggaagaaggcaagtttaacctcatgctcatggagtgc
tccatctgcaacgaaatcatccaccctggatgccttaagattaaggagtcagagggcgtg
gtcaacgatgagcttccaaactgctgggagtgtccaaagtgtaaccacgccggcaagacc
gggaaagcctacaagcaaaagcgtggccctggctttaagtacgcctccaatctgcccggc
tccctgctcaaggagcagaagatgaaccgggacaacaaggaagggcaggagcctgccaag
cggaggagtgagtgtgaggaggcgccccggcgcaggtcagacgagcaccccaagaaggtg
ccccctgacggcatcctgcgccgaaagtcggatgatgtgcacctgaggaggaagcggaaa
tatgagaagccccaggagctgagtggacgcaaacgagcctcgacgcttcaaacgtccccc
ggttcctcctctcacctctcgccgaggccccctctaggcagcagcctcagcccctggtgg
agatccagtctcacttacttccagcagcagctaaagcctggcaaagaagataagcttttc
aggaaaaagcgtcgatcctggaagaactcagaggaccggatggctctagccaacaagccc
ctcagacggttcaagcaggagccagaggatgacctgcccgaggcgccccccaagaccagg
gagagtgaccactcccgctccagctcccccactgctgggcccagtaccgaaggcacagag
ggctcggaggagaagaagaaagtgaagatgcgccggaagcggcggctccccaacaaggag
ctgagcaaggagctgagcaaggagctgaaccaggagatccagaagacggagagcagcctg
gccaatgagaaccaccagcccatcaagtcagagcccgagagtgagaacgaggagcccaag
cggcccctgggcctctgtgagcgcccccaccgcttcagcaaggggctcaatggcaccccc
cgggagctgcggcaccagctggggcctgggctgcgcagcccaccccgagtcatctcccgg
ccccctccctccgtgtccccccctaaatgtatccagatggagcgacatgtgatccggccg
ccccccatcagccccccgcccgactcgctgcctctggacgatggggcagcccacgtcatg
cacagggaggtgtggatggccgtcttcagctacctcagccaccgagacctatgtgtttgc
atgcgggtctgcaggacctggaaccgctggtgctgtgataagcggttatggacccgcatc
gacctgaaccactgcaagtccatcacgcccttgatgctgagtggcatcatccggcgacag
cctgtttccctggacctcagctggaccaatatctccaagaaacagctgagctggctcatt
aaccggttgcctgggctccgagacttggtgctgtcgggctgctcatggattgcagtctca
gccctctgtagctccagctgcccgctgctccggaccctggatgtccagtgggtagaagga
ctaaaggacgcccagatgcgggatcttctgtctccacctacggataacaggccaggtcag
atggataatcggagtaagctccggaacatcgtggagctgcgtcttgctggcctggacatc
accgacgcctccctgcggctcatcattcgccacatgcccctgctctccaagctccacctc
agttactgtaaccatgtcaccgaccagtccatcaacctgctcactgccgtgggcaccacc
acccgagactccttaaccgaaatcaacctttcagactgcaataaggttactgaccagtgc
ctgtccttcttcaaacgctgtgggaatatctgtcacattgacctgaggtattgcaagcaa
gtcaccaaggaaggctgcgagcagttcatagccgaaatgtctgttagtgtccagttcggg
caagtggaagaaaaactcctgcaaaaactgagttag
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integrated database retrieval system
