Sus scrofa (pig): 100513283
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Entry
100513283 CDS
T01009
Symbol
APAF1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
ssc
Sus scrofa (pig)
Pathway
ssc01524
Platinum drug resistance
ssc04115
p53 signaling pathway
ssc04210
Apoptosis
ssc04215
Apoptosis - multiple species
ssc05010
Alzheimer disease
ssc05012
Parkinson disease
ssc05014
Amyotrophic lateral sclerosis
ssc05016
Huntington disease
ssc05020
Prion disease
ssc05022
Pathways of neurodegeneration - multiple diseases
ssc05134
Legionellosis
ssc05152
Tuberculosis
ssc05160
Hepatitis C
ssc05161
Hepatitis B
ssc05162
Measles
ssc05164
Influenza A
ssc05168
Herpes simplex virus 1 infection
ssc05169
Epstein-Barr virus infection
ssc05200
Pathways in cancer
ssc05222
Small cell lung cancer
ssc05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
100513283 (APAF1)
04215 Apoptosis - multiple species
100513283 (APAF1)
04115 p53 signaling pathway
100513283 (APAF1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100513283 (APAF1)
09162 Cancer: specific types
05222 Small cell lung cancer
100513283 (APAF1)
09172 Infectious disease: viral
05161 Hepatitis B
100513283 (APAF1)
05160 Hepatitis C
100513283 (APAF1)
05164 Influenza A
100513283 (APAF1)
05162 Measles
100513283 (APAF1)
05168 Herpes simplex virus 1 infection
100513283 (APAF1)
05169 Epstein-Barr virus infection
100513283 (APAF1)
09171 Infectious disease: bacterial
05134 Legionellosis
100513283 (APAF1)
05152 Tuberculosis
100513283 (APAF1)
09164 Neurodegenerative disease
05010 Alzheimer disease
100513283 (APAF1)
05012 Parkinson disease
100513283 (APAF1)
05014 Amyotrophic lateral sclerosis
100513283 (APAF1)
05016 Huntington disease
100513283 (APAF1)
05020 Prion disease
100513283 (APAF1)
05022 Pathways of neurodegeneration - multiple diseases
100513283 (APAF1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
100513283 (APAF1)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
100513283 (APAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
APAF1_C
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
EIF3I
NB-ARC
WD40_Gbeta
WD40_MABP1-WDR62_2nd
WHD_APAF1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
CARD
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
RMC1_N
Beta-prop_VPS8
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
WD40_like
eIF2A
Ge1_WD40
WD40_RFWD3
CARD_2
Beta-prop_WDR11_2nd
Beta-prop_Nup120_160
Beta-prop_DCAF4
Beta-prop_ACSF4
Beta-prop_RSE1_2nd
Hira
AAA_16
Beta-prop_DCAF12
Beta-prop_SPT8
AAA_22
Beta-prop_WDR19_2nd
NPHP3_N
AAA_18
DUF2677
ATPase_2
nSTAND6
Motif
Other DBs
NCBI-GeneID:
100513283
NCBI-ProteinID:
XP_003481790
Ensembl:
ENSSSCG00000000884
ENSSSCG00000021098
ENSSSCG00000029091
Vega:
OTTSUSG00000000892
UniProt:
A0A5K1TZD3
A0A8D1ZBP4
LinkDB
All DBs
Position
5:complement(85166616..85258751)
Genome browser
AA seq
1249 aa
AA seq
DB search
MDAKARNCLLQHREALERDIKTSYIMDHMISNGVLTLSEEEKVKNEPTQCQRAALLIKMI
LKKDNYAYISFYNALLHEGYKDLAALLHGGLPVVSSSNSKDSVAGITSYVRTVLCEGGVP
QRPVVFVMRKKLVNAVQQKLFKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEVCFPG
GVHWVSIGKQDKSGLLMKLQNLCARLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
ILDDIWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKYVIPVESGLGKEKGLEILSLFVN
MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWDYYLRQLQNKQFKRIKKSSSYD
YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN
KSLLFCDRNGKSFLYYLHDLQVDFLTEKNRSQLQDLHKKMITQFQRHHRLHTLSPDQEDC
MYWYNFLAYHMASANMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDGTV
CENFQEFLSLNGHLLGRQPFPNIVQLGLCELETSEVYRQAKLQAKQEVDNGMLYLEWINK
KNIKNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV
LCCAFSADDRFIATCSVDKKVKIWNSVTGELVQSYDEHSEQVNCCHFTNNSNHLLLATGS
SDYFLKLWDLNQKECRNTMFGHTNSVSHCRFSPDDKLLASCSADGTLKLWDVKSANERKS
INVKQFFLNSEESQEDMEVMVKCCSWSADGASLVVAAKNKVLLFNIHTGGLLAEIHTGHH
STIQYCDFSPSNHLAVVALSQYCVELWNMDSCLKVADCRGHLSWVHCAMFSPDGSSFLTS
SDDETIRLWETKKVCKNSAIVLKQEIDVVFQENEVMVLAVDNIRRLQVINGKTGQIDYLT
EAQVSCCCLSPHLQYLAFGSDDGAIQVLELLNNRLFQSRTRHKNTVRHIQFTTDGKNVIS
SSDDSAIQVWNWQSEETVSLQAHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGRIEKD
FVCHQDTVLSCDISPDATKFSSTSADKTAKIWSFDLLSPLHELRGHKGCVRCSAFSVDST
LLATGDDNGEIRIWNVSNGELLHSCAPVLVEGGAATHGGWVTDLRFSPDGKMLVSAGGYL
KWWNVDSGKSIQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYVLKILE
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaaaagctcgaaattgtttgcttcaacatagagaagccctggaaagggacatc
aaaacatcctacatcatggatcacatgattagtaatggcgttttaacactttcagaggag
gaaaaagtgaaaaatgagcctactcaatgccaacgagcagctctgctaattaaaatgata
cttaaaaaagataattatgcctacatatcattctacaatgctctgctacatgaagggtat
aaagatcttgctgcccttctccatggtggccttcctgtcgtctcttcttccaacagcaaa
gattcagttgctggaataacttcctatgtaaggacagtcctgtgtgaagggggagtgcca
cagaggcccgtcgtctttgttatgaggaagaagctcgtgaatgcagttcagcagaagctc
ttcaaactgaatggtgaaccgggatgggtcaccatatatggaatggcgggttgtgggaag
tctgtgttagctgcagaggctgttcgagatcattctctcttagaagtttgtttcccaggg
ggtgtgcattgggtttcaatagggaaacaagacaaatctgggcttctgatgaaactgcag
aatctttgtgcacggttggatcaggatgagagtttctcccagaggcttccacttaatatt
gaagaggctaaagaccgtctccgaattctgatgctgcgcaaacacccaaggtctctgttg
atcttggatgatatttgggatccttgggtattaaaagcttttgacaatcagtgtcagatt
cttcttacaactagagacaagagtgttacagattcagtaatgggtcctaaatatgtaata
cctgtggagagtggcttaggaaaagaaaaaggacttgaaattttatccctttttgttaat
atgaagaaagcagatttgccagaacaagctcacagtattataaaagaatgtaaaggttct
cctcttgtagtgtctttaattggtgcacttttacgtgattttcccaaccgctgggattac
tacctcaggcaacttcagaataagcaatttaagaggataaagaaatcttcatcttatgat
tatgaagctctggatgaagccatgtcgataagtgttgaaatgctccgagaagacatcaaa
gattattacacagatctttccatccttcagaaagatgttaaggtgcctacaaaggtgtta
tgtattctctgggacatggaaaccgaggaagtcgaagacatactgcaggagtttgttaat
aagtctctcttattctgtgatcggaatggaaagtcatttctttattatttacatgacctt
caagtagatttccttacagagaagaatcgcagccagcttcaggatctgcacaagaagatg
atcactcagttccagagacatcaccggctacacactctttcaccagatcaggaggactgc
atgtattggtacaattttctggcttatcacatggccagtgctaatatgcacaaagaactg
tgtgctttaatgttctccctggattggattaaagcaaaaacggaacttgtaggccctgct
catctgattcatgagtttgtggaatataggcatattttggatgaaaaggatggcacagtc
tgtgagaatttccaggagtttttatctttaaatggacatcttcttggacgacagccgttt
cctaatattgtgcaactgggtctctgtgaactggaaacttcagaagtgtatcggcaagct
aagctgcaggccaagcaggaggtcgataacggaatgctttacctggagtggataaacaaa
aaaaacatcaagaacctctcccgcttagttgtccgcccccatacagatgctgtttaccat
gcttgcttttctgaggatggtcaaagaatagcttcttgtggagctgataaaaccttacag
gtgttcaaagctgaaacaggagaaaaacttctagaaatcaaggctcacgaggatgaagtg
ctttgctgtgcattctctgcagatgacagatttatagcaacttgctcagtggataaaaaa
gtgaagatttggaattctgtgaccggggaactggtacaaagctatgatgagcactcagag
caagtcaactgctgccacttcaccaacaacagtaatcaccttctcttagccactggctca
agtgactacttcctcaaactctgggatctgaatcaaaaagaatgtcgaaataccatgttt
ggtcatacaaattcagtcagtcactgccgattttcaccagatgataagcttttggctagt
tgttcagctgatggaacattaaagctttgggatgtgaagtcagcaaatgagaggaaaagc
attaatgtgaagcagttcttcctaaattcagaggagtctcaagaggatatggaagtgatg
gtgaaatgctgttcgtggtcagctgacggtgccagcttagtggtggcagcaaaaaataaa
gtcctgctttttaacattcatacaggtggcctgttggcagaaatccacacaggccatcac
agcaccatccagtactgtgacttctcccccagtaaccatttggcagtagtggctttgtcc
cagtactgtgtggagttgtggaatatggattcatgtttaaaagtagctgactgcagagga
catttaagttgggttcattgtgcaatgttttctcctgatggatcatcgtttttgacatct
tctgatgacgagacaatcaggctctgggagacaaagaaagtgtgtaagaactctgcgata
gtgttaaaacaagaaatagatgttgtgtttcaagaaaatgaagtgatggttcttgcagtt
gacaacataagacgtctgcaagtcattaatggaaaaacaggtcagattgattatctgacg
gaagcccaagtgagttgctgctgcttaagtccacatcttcagtaccttgcgtttggaagc
gatgatggagccattcaggttttagaactcctaaacaacagactcttccagtccaggact
aggcacaagaacactgtacggcatatccagttcactactgatggaaagaatgttatctca
agctctgatgattctgcaattcaggtgtggaattggcagtcagaggagactgtctctctg
caagcccatcaggaaacagtgaaagactttagactcttgaaaaattcgagactgctttcc
tggtcatttgatggaacagtaaaggtatggaatattataactggaagaatagaaaaggac
tttgtctgtcaccaggatacagtactttcttgtgatatttctcctgatgctaccaaattt
tcttctacctctgctgacaaaactgcaaagatttggagttttgacctcctttcccctctt
catgaattgagaggccacaaaggctgcgtgcgctgctctgccttctccgtggacagtacc
ctgttggcgactggagatgacaacggagaaatcaggatatggaatgtctcaaacggtgag
cttcttcattcgtgtgctccagtcttagtagaaggaggagctgctacccacggaggctgg
gtgaccgaccttcgcttttctccagatggcaaaatgcttgtttctgctggagggtatctt
aagtggtggaatgttgactctgggaaatccatacagacgttctacacaaatggaaccaat
cttaagaaaatacatgtgtcccctgacttcaaaacatatgtgactgtggataatcttggt
attctgtatgttttaaagattttagagtaa
DBGET
integrated database retrieval system
