KEGG   Sus scrofa (pig): 100514071
Entry
100514071         CDS       T01009                                 
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03018  RNA degradation
ssc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100514071 (LSM3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100514071 (LSM3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100514071 (LSM3)
   03041 Spliceosome [BR:ssc03041]
    100514071 (LSM3)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100514071 (LSM3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100514071 (LSM3)
Spliceosome [BR:ssc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100514071 (LSM3)
 Complex C
  U2 snRNP components
    100514071 (LSM3)
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E RimP_C
Other DBs
NCBI-GeneID: 100514071
NCBI-ProteinID: NP_001231857
Ensembl: ENSSSCG00000011601
UniProt: A0A8D0THE4 F2Z5S4
LinkDB
Position
13:complement(70339685..70349802)
AA seq 102 aa
MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgacgtggaccagcaacaaactaccaacactgtagaagagcccctggatctc
atcagactcagcctggatgagcgaatctatgtgaaaatgagaaatgacagagagcttcga
ggcaggttacatgcgtatgatcagcacttaaatatgatattgggagatgtggaagaaact
gtgacaactatagaaattgatgaagaaacatatgaagagatatataaatcaacaaaacgg
aatattccaatgctctttgtccggggagatggcgttgtgctagttgccccaccgttgaga
gttggctga

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