Sus scrofa (pig): 100522208
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Entry
100522208 CDS
T01009
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100522208 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssc03041
]
100522208 (EFTUD2)
Spliceosome [BR:
ssc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100522208 (EFTUD2)
Complex C
U5 SnRNP specific factors
100522208 (EFTUD2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
100522208
NCBI-ProteinID:
XP_003131380
Ensembl:
ENSSSCG00000017346
UniProt:
A0A8D1HBP4
F1RQZ9
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All DBs
Position
12:18474367..18514993
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDEDDDDDVGDHDEEHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttatatgatgagtttgggaattatattggaccagagcttgattctgat
gaagatgatgatgaattgggcagagagaccaaagaccttgatgagatggacgacgaggac
gacgatgacgatgtaggagatcatgatgaagagcaccctgggatggaggtggtgctgcat
gaggacaagaagtactaccccacagccgaggaggtgtacggccccgaagtggagaccata
gttcaggaggaggacacgcagcctctcaccgaacccattattaagccagtgaaaaccaag
aaattcactctgatggagcagacactacctgtcacagtgtatgaaatggatttcttggca
gatctgatggataactcggagctcatcagaaacgtgacgctctgtggccatctccaccat
ggcaagacgtgttttgtagattgtttaatagagcagactcacccggaaatcagaaagcgc
tatgaccaagatctgtgttacacagacatcctcttcacagagcaagagaggggtgttggc
atcaaaagtactcctgtgacagtggtcttgccagataccaaaggaaaatcctatctcttc
aatatcatggacactccagggcatgtgaatttttctgatgaagtcacagctggcttgcgc
atctcagatggagtggtcctgttcattgatgctgccgagggcgtgatgctgaacacagag
cggctgatcaagcacgccgtgcaggagaggctggcggtcaccgtgtgcatcaacaagatt
gaccggctaatcctggagctgaagctgcctcccactgacgcgtattacaagctgcgtcac
atcgtagatgaggtcaatggattgataagcatgtattccaccgacgagaacctgatcctt
tccccgctcctgggcaacgtctgcttctccagctcccagtacagcatctgcttcacactg
ggctcctttgccaagatctatgctgacacctttggggatattaactaccaggaatttgct
aaaagactctggggtgacatctatttcaaccccaagacgcgaaagttcacaaaaaaagcc
ccgaccagcagctcccagaggagcttcgtggagtttatcttggagcccctatataagatc
ctcgctcaggttgtgggtgacgtggacaccagcctcccaaggaccctggatgagcttggc
atccacctgaccaaggaggagctgaagctgaacatccgccccctgctcaggctggtctgc
aaaaaattctttggcgagttcacaggctttgtggacatgtgtgtgcagcatatcccctct
ccaaaggtgggtgccaagcccaagattgagcacacgtacactggcggtgtggactccgac
ctcggcgaggccatgagtgactgtgaccctgatggtcccctgatgtgccacactaccaag
atgtacagtacggacgatggagttcaatttcacgcctttggtcgagtgctgagcggcacc
atccacgccgggcagcccgtgaaggtcctgggggagaactacaccctggaggatgaggag
gactcccagatatgcaccgtgggccgcctctggatctctgtggccaggtaccacattgaa
gtgaaccgcgttcctgctggcaactgggttctgatcgaaggtgttgaccaaccaattgtg
aagacagcgaccataactgagccccgaggcaatgaggaggctcagattttccggcccttg
aagttcaacaccacctctgttatcaagatcgctgtggaaccggtcaacccctccgaactg
cccaagatgctggacggcctgcgcaaggtcaacaagagctacccgtcgctcaccaccaag
gtggaagagtctggcgagcacgtgattctgggtactggggagctctacctggattgtgtg
atgcacgacttgcggaagatgtactcggagatagacatcaaggtggctgaccccgtggtc
acgttttgtgagacagtagtggaaacgtcctccctcaagtgctttgctgaaactcccaat
aagaagaacaagatcaccatgattgctgagccccttgagaagggcctggccgaggacata
gagaacgaggtggtgcagatcacatggaacaggaagaagctgggcgagttcttccagacc
aagtacgactgggatctgctggctgcccgttccatctgggcttttggccctgatgccact
ggccccaacatcctggtggatgacaccctgccctctgaggtggacaaggctcttctcggc
tcggtgaaggacagcatcgttcaaggtttccagtggggaactagggaggggcccctctgt
gacgagttgattcgaaatgtcaagtttaagatcctggatgcagtggttgcccaggagccc
ctgcatcggggcgggggccaaatcatccccacagccaggagagttgtctattctgccttc
ctcatggccactcctcgtctgatggagccctactactttgtagaggtccaggcccctgca
gactgtgtctctgccgtctacaccgtcctggccaggcgcaggggacatgtgactcaggat
gctcccatccctggctcccctctctacaccatcaaagctttcatcccggccatcgactct
tttggcttcgagactgatctgcggactcacacgcaggggcaggccttttccttgtctgtc
ttccaccattggcagatcgtacccggtgatcctctggacaagagcattgtcatccgcccc
ttggagccacagccagctcctcacctggcccgagagttcatgatcaaaacccgtcgcagg
aagggcctgagtgaggacgtgagcatcagcaagttcttcgatgatcctatgttgctggag
ctcgccaagcaggatgttgtgctcaattaccccatgtga
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