Sus scrofa (pig): 396629 Help Entry 396629            CDS       T01009                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism ssc  Sus scrofa (pig) Pathway ssc04010   MAPK signaling pathway ssc04064   NF-kappa B signaling pathway ssc04120   Ubiquitin mediated proteolysis ssc04140   Autophagy - animal ssc04144   Endocytosis ssc04380   Osteoclast differentiation ssc04620   Toll-like receptor signaling pathway ssc04621   NOD-like receptor signaling pathway ssc04622   RIG-I-like receptor signaling pathway ssc04657   IL-17 signaling pathway ssc04722   Neurotrophin signaling pathway ssc04936   Alcoholic liver disease ssc05132   Salmonella infection ssc05133   Pertussis ssc05135   Yersinia infection ssc05140   Leishmaniasis ssc05142   Chagas disease ssc05145   Toxoplasmosis ssc05152   Tuberculosis ssc05160   Hepatitis C ssc05161   Hepatitis B ssc05162   Measles ssc05168   Herpes simplex virus 1 infection ssc05169   Epstein-Barr virus infection ssc05170   Human immunodeficiency virus 1 infection ssc05171   Coronavirus disease - COVID-19 ssc05200   Pathways in cancer ssc05222   Small cell lung cancer ssc05235   PD-L1 expression and PD-1 checkpoint pathway in cancer ssc05417   Lipid and atherosclerosis Brite KEGG Orthology (KO) [BR:ssc00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     396629 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     396629 (TRAF6)    04064 NF-kappa B signaling pathway     396629 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     396629 (TRAF6)    04140 Autophagy - animal     396629 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     396629 (TRAF6)    04621 NOD-like receptor signaling pathway     396629 (TRAF6)    04622 RIG-I-like receptor signaling pathway     396629 (TRAF6)    04657 IL-17 signaling pathway     396629 (TRAF6)   09156 Nervous system    04722 Neurotrophin signaling pathway     396629 (TRAF6)   09158 Development and regeneration    04380 Osteoclast differentiation     396629 (TRAF6)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     396629 (TRAF6)    05235 PD-L1 expression and PD-1 checkpoint pathway in cancer     396629 (TRAF6)   09162 Cancer: specific types    05222 Small cell lung cancer     396629 (TRAF6)   09172 Infectious disease: viral    05170 Human immunodeficiency virus 1 infection     396629 (TRAF6)    05161 Hepatitis B     396629 (TRAF6)    05160 Hepatitis C     396629 (TRAF6)    05171 Coronavirus disease - COVID-19     396629 (TRAF6)    05162 Measles     396629 (TRAF6)    05168 Herpes simplex virus 1 infection     396629 (TRAF6)    05169 Epstein-Barr virus infection     396629 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     396629 (TRAF6)    05135 Yersinia infection     396629 (TRAF6)    05133 Pertussis     396629 (TRAF6)    05152 Tuberculosis     396629 (TRAF6)   09174 Infectious disease: parasitic    05145 Toxoplasmosis     396629 (TRAF6)    05140 Leishmaniasis     396629 (TRAF6)    05142 Chagas disease     396629 (TRAF6)   09166 Cardiovascular disease    05417 Lipid and atherosclerosis     396629 (TRAF6)   09167 Endocrine and metabolic disease    04936 Alcoholic liver disease     396629 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ssc04131]     396629 (TRAF6)    04121 Ubiquitin system [BR:ssc04121]     396629 (TRAF6) Enzymes [BR:ssc01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      396629 (TRAF6) Membrane trafficking [BR:ssc04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     396629 (TRAF6) Ubiquitin system [BR:ssc04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     396629 (TRAF6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 Sina_ZnF SlyX TRAF3_RING RING_XB3-XBAT31 Spc29 U-box DUF3450 zf-RING_11 DUF4455 DUF7310 DUF16 Med21 EzrA Myosin_tail_1 DUF6271 TACC_C ADIP DUF7607 DM PspA_IM30 CENP-F_leu_zip Motif Other DBs NCBI-GeneID:  396629 NCBI-ProteinID:  NP_001098756 Ensembl:  ENSSSCG00000013291 Vega:  OTTSUSG00000002873 UniProt:  A7XUJ6 LinkDB All DBs Position 2:24602749..24628263 Genome browser AA seq 541 aa AA seqDB search MSLLHCENSCGSSQSESDCCAAMAASSCGAAAKDDGVSGTASTGNLSSSFMEEIQGYDVE FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP DNFAKREILSLTVKCPNVGCLHKMELRHLEDHQAHCEFALMNCPQCQRPFQKCQLNIHIL KECPRRQVSCVNCAVSMAFEDKEIHDQNCPLANVICEYCNTVLIREQMPNHYDLDCPTAP VPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMMAQALQGLSLAVAPVPQRDMLPYDSSP LSRISSGCCSDQNFQETIQQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRSLEDKV AEIEAQQCNGIYIWKIGNFGMHLKSQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQ RCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPIRQNHEEIMDAKPELLAFQR PTIPRNPKGFGYVTFMHLDALRQRTFIKDDTLLVRCEVSTRFDMGSLRREGFQPRSTDSG T NT seq 1626 nt NT seq  +upstreamnt  +downstreamnt atgagtctgctacattgtgaaaacagctgtggatccagccagtctgagagcgactgctgt gctgccatggctgccagctcctgtggtgctgcagcgaaagatgacggtgtgagtggaact gccagcacagggaatctctccagctcttttatggaagagatccagggatatgatgtggag tttgacccacccctggaaagcaaatatgagtgccccatctgcttgatggcgttacgggaa gcagtgcagaccccctgtggtcataggttctgcaaagcctgcatcatcaagtcaataagg gatgcaggtcacaaatgtccagttgacaatgaaatactgctagaaaatcaactattccct gacaattttgcaaaacgagagattctttctctgacggtgaagtgtccaaatgtaggttgt ttgcacaagatggaactgaggcatcttgaggatcatcaagcacattgtgaatttgctctt atgaattgtccccagtgccaacgtcccttccaaaaatgccaacttaatattcacattctc aaggagtgtccgaggagacaggtttcttgtgtaaactgtgctgtatctatggcatttgaa gataaagagattcatgaccagaactgtcctttggcaaatgtcatctgtgaatactgcaat acggtgctcatcagagaacagatgcccaatcattatgacctggactgtcctacagcccca gttccatgcacattcagtacttttggctgccatgaaaagatgcagaggaatcacttggca cgccacctgcaagagaatacccagtcgcacatgagaatgatggcccaggctcttcagggt ttaagcctcgcagtagctcctgtacctcagcgtgatatgcttccctatgattcttcccct ttgtctcggatttcctctggctgttgctcagaccagaatttccaggaaaccattcagcag ttagaaggtcgccttgtaagacaggaccatcaaatccgggagctaactgcgaaaatggaa actcagagcatgtacgtaagtgagctcaaacgaactattcgaagccttgaggacaaagtt gcagaaatagaggcacagcagtgcaatgggatttacatctggaagattggcaactttggg atgcacttgaaatctcaagaggaggagaaacctgttgtcattcacagtcctggattctac acaggcaaacctggctacaaactgtgcatgcgtctgcacctgcagctgcccacggcacag cgctgtgccaactacatatccctctttgtccacaccatgcaaggagagtatgacagccac ctcccttggcccttccagggaacgatacgccttacaatcctcgaccagtctgaagcgcct atcaggcaaaaccatgaagagataatggatgccaaaccagagctgcttgccttccagaga cccacaatcccacggaaccccaaaggttttggctatgtgacttttatgcatctggacgcc ctaagacagagaaccttcatcaaggatgacactctattagtacgctgtgaggtctccacc cgcttcgacatgggtagtcttcggagggagggttttcagccacgaagtacagactcgggg acatag

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