Sporothrix schenckii: SPSK_04892
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Entry
SPSK_04892 CDS
T05555
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ssck
Sporothrix schenckii
Pathway
ssck03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPSK_04892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssck03041
]
SPSK_04892
Spliceosome [BR:
ssck03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
SPSK_04892
Complex C
U5 SnRNP specific factors
SPSK_04892
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
MMR_HSR1
EFL1
DUF5505
Motif
Other DBs
NCBI-GeneID:
27666929
NCBI-ProteinID:
XP_016583739
UniProt:
A0A0F2LUA8
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MDDLYDEFGNFIGEEPEASDEGSEQGDADADNYVYGDDEEVGEDGVGQELMEVDDEGPSN
AVILHEDKQYYPTAAQVYGSEVEALVQEEDAQPLSEPIVAPVEQKKFVVEEADLPPVFFD
RGFMADLMNFPEQIRNVAFAGHLHHGKTAFVDMLVLETHDIGERLEQRSGRSRDEQLRYT
DVHVLERERGVSTRSAPMSLVLPSTKGKSHLINLIDTPGHVDFADEVASALRLVDGVCLV
VDVVEGVQLHTEMVVRHAMLEGLPLTLIVNKVDRLILELKLPPTDAYYKLKSTIEAVNKV
IFETLPGETDDRKRVSPEKGNVLFACTDMKWCFTLASFAKMYADSFGAMDTGEFAKRLWG
DVFFNPKKRSFTRKAVEDNAKRSFVHFVLEPIYKLFTHTISENPQDLKAFLAPLGIALKP
SQYKADARVLLNLVCAQFFGPPAAFVDMVVAHVPSPVEASARHLQRYYTGPLDTKVAESI
GACDQDGPLVMEVTKLYSAPDAKSFHALGRVFSGIARPGTEVRVLGEGYSLDDEEDMAPA
QISDVWIPETRYNVPTDGVPAGNWVLLGGVDNSIVKSATVVARHFADDEDAYIFKPVTHY
TESVFKIAVEPVNPSELPKMLDGIRKINKSYPLITTKVEESGEHILIGTGEMYMDCVMHD
LRLQYADMEIKVSDPLTRFCETVVDESATRCWTLTPNKKNRLTMVAEPLEEGLAGDIESG
AVRIKDPVRKTAKFLQDKYDWDLLASRSVWAFGPEEMGANLLQDDTLPGEVDKKMLNTVK
ESIRQGFSWATREGPLCEEPIRNIKFKLTDVTLAQETIYRGGGQIIPTARRACYGSFMLS
SPRLMEPVYTVSMTGPEAASSKLYQILSQRRGHVLTDVGIPGTNLSRTVGLLPVIDSFGF
ETDFRISSDNTGLVSLVFDRWQVVPGDPLDRDVILRPMQMAPVQGTARDFVLKTRKRKGL
SEDVSIGKFLEPELYSELVSSGTLEEGS
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttatacgacgagtttggcaacttcatcggcgaggagcccgaagcttcggac
gaggggtcggagcagggcgacgccgatgccgacaactacgtctacggggatgacgaggag
gtaggcgaggatggcgtgggacaggaactgatggaggtggacgatgaaggaccgtcgaac
gccgtcatcctgcacgaagataaacagtactacccgactgccgcacaagtatacgggagc
gaggtggaggcgctggtgcaggaggaggatgcacaaccgcttagcgagccgattgtggcg
ccggtcgagcagaagaagtttgtcgttgaggaggcggacctgccgcccgtctttttcgac
cgcgggtttatggcagacctcatgaacttccccgagcaaatacgaaacgtggcctttgcg
ggccacctgcaccacggcaagacggcgtttgtggacatgctggtgctcgagacgcacgac
attggcgagcggctggagcagcggtccggccggagccgcgacgagcagctgcggtacacg
gacgtgcacgtgctggagcgagagcgtggcgtgtcgacgcggagcgcgcccatgagcctg
gtgctgccgtcgaccaagggcaagtcgcacctcatcaacctcatcgacacgccgggccac
gtcgactttgccgacgaggtggcgtcggcgctgcggctcgtcgacggcgtgtgtctcgtg
gtggacgtcgtggagggcgtgcagctgcacacggaaatggtggtgcggcacgcgatgctc
gagggcctgccgctcacgctgattgtgaacaaggtggaccggctgatcctcgagctcaag
ctgccgccgacggacgcgtactacaagctcaagagcacgatcgaggcggtcaacaaggta
attttcgagacgctgccgggcgagacggacgaccgcaagcgcgtcagccccgaaaagggc
aacgtgctctttgcctgcacggacatgaagtggtgtttcacgctggcatcgtttgccaag
atgtacgccgacagcttcggcgccatggacacgggcgagtttgccaagcggctgtggggc
gacgtcttcttcaaccccaagaagcggtcgtttacgcgcaaggccgtcgaggacaacgcc
aagcgctcgtttgtgcactttgtgctcgagcccatctacaagctgttcacgcacaccatc
agcgagaacccgcaggacctcaaggcgtttctggcgccgctcggcatcgccctcaagccg
tcgcagtacaaggcggacgcccgtgtgctgctcaacttggtgtgcgcccagttcttcggc
ccgcccgccgcctttgtcgacatggtcgtggcgcacgtcccgtcgccggtcgaggcgtcc
gcgcgccatctgcagcggtactacaccggcccgctcgacaccaaggtggccgagtcgatc
ggcgcctgcgaccaggacggcccgctggtgatggaggtcaccaagctgtacagcgcgcca
gacgccaagagcttccacgcgctgggccgcgtgttcagcggcattgcgcggcccggcaca
gaggtgcgcgtgctgggggagggctactcgctggacgacgaggaggacatggcgccggcg
cagatttccgacgtgtggatcccggagacgcgctacaacgtgccgaccgatggcgtgccg
gcaggcaactgggtgctgctgggcggcgtggacaactcgatcgtcaagtcggcgacggtg
gtggcgcggcactttgcggacgatgaggacgcgtacatcttcaagccggtgacgcactac
acggagtcggtgttcaagattgcggtggagccggtcaacccgtcggagctgcccaagatg
ctggatggcatccgcaagatcaacaagagctacccgctcatcacgaccaaggtcgaggag
tcgggcgagcacatcctgatcggcacgggcgagatgtacatggactgcgtgatgcacgac
ctgcggctgcagtatgcggacatggagatcaaggtgtcggacccgctgacgcggttctgc
gagacggtggtggacgagtcggccacgcggtgctggacgctgacgcccaacaagaagaac
cggctgacgatggtggccgagccgctggaggaaggcctggcaggggacattgagtcgggc
gccgtgcgcatcaaagaccccgtgcgcaagacggccaagttcttgcaggacaagtacgac
tgggatctgctggcatcgcgcagcgtctgggcctttgggccggaggagatgggcgccaac
ctgctgcaggacgacacgctgccgggcgaggtcgacaagaagatgctcaacacggtcaag
gaatcgatccggcagggctttagctgggccacgcgggaaggccctctctgtgaagaaccc
atccgcaacatcaagttcaagctcacagacgtcacgctcgcgcaagagaccatctaccgt
ggcggcggccagattatcccgacggcccgccgtgcctgctacggctcgtttatgctgtcg
tctccgcgacttatggagcccgtctacaccgtctcgatgaccggcccggaggccgcgtcc
tccaagttgtaccagatcctgtcgcagcgccgcggccacgtgctgacggacgtcggtatt
cccggcaccaatttgtcgcgcacggtcggcctgctgcccgtcatcgactcgtttggcttt
gagacggacttccgcatctcgtccgacaacacaggcctcgtcagtctcgtgtttgaccgg
tggcaggtcgtgccgggcgacccgctggaccgcgatgtgattttgcggccgatgcagatg
gcgccagtgcagggcacggcacgggactttgtgctcaagacgcggaagcgcaagggtctc
agcgaggacgtgtcgattggcaagttcctagagccggagctgtacagcgagctggtatcg
agcgggacgctggaggagggctcatag
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