Sporothrix schenckii: SPSK_08421
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Entry
SPSK_08421 CDS
T05555
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ssck
Sporothrix schenckii
Pathway
ssck03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SPSK_08421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssck03400
]
SPSK_08421
Enzymes [BR:
ssck01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SPSK_08421
DNA repair and recombination proteins [BR:
ssck03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
SPSK_08421
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
27670296
NCBI-ProteinID:
XP_016587722
UniProt:
A0A0F2MA58
LinkDB
All DBs
Position
Unknown
AA seq
1021 aa
AA seq
DB search
MPFLFSHVCDLFQQVAELPTAHRSRPRSVNLVVQSWFAEHRKEVDALIVERPTSSAAGSS
GAAALLSTLLPDRRTDRVYALQARGLQRILIRALGLGHSRVPELSRWMRPCDHATTGPVD
LADCVEAILQRTPNPTPNVPVTVEEIDATLHGVAARCRFSAPAVRGRHTARPSKNDFIAP
PPTQDALARLYQRLDPCGAKWLTRLILRDLRPAVLDGAVVARAFHRALPQALQVFADLEA
AVASLSGDNDIVRPRLGVKVGRQQWAKGRSIQHCIAMGGPQRMSCEHKMDGEYVQVHVNL
VNGPDHKDCLQLFSKSGKDSTWDRVNLHSAIRESLRLGQPDCPITKGCILEGEMLAYDEK
AAKIMDFDAIRKHVNRSGSRLYCDPRGDTQDHEHLMIVYYDVMLVDDESLLSTSREDRFR
RLEKLVTCRPGYAELVKREIVDFRARTAPAQLRRAFARCITAHLEGLVLKPLKDPYFDLK
GPGSGTTSSTTLEWPHLTSYVIKLKKGYIGGFGEVGDFAIVGARYDACKAREYPSDLPGL
KWTHFFIGCQETPKAGQTRPRFVVTNVVTLTPAQMATFLRHCRPRVVPMPRRTDGRKTRN
TRRATSTPGADGGHRDTCPFDLAPLEPGLDDSKGGPTDLFADPPVVDIRCFSFHRPGYGR
FWSPRFPSVVKFHFDRTWADTLPFDDLQTMAVEAEARTAVYDDDFFDGPDSGGGSGGPGP
DAYDASQHAHWVAQLKRADKGGIAMDAETSQSQSQSQSPSQSTTRSQSSSGSTQRTQSAT
SQPPLSAGLGLPLIDILEEAEAEDEDKGLCKQSQLSIVTVKTYDERYDKYEKAKLAKAKL
AKPNLVVSVIDLTGDTQETEVAEETERVVASVEESTVKGSTVEEDAAVGKREILPGEPSP
PRTPKRRATSLPLMGTSPMTPKTPPRVSNSPLPPASCSPIDFVSSLTAPSTADGSQASGS
DESQSSLDGLGSQDSLEKNAHRTKSLPGDTPSRKRLRAWDAASLDLCPVSPPQLKRARSG
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgcccttcctcttcagccatgtctgtgatctcttccagcaggtcgctgagctcccgacg
gctcatcgaagtcgacctcggtccgtcaacctggtcgtccaatcttggtttgcagagcac
aggaaggaggtcgatgcgttgatcgtcgaacgaccaacgtcctccgcggccggctcatca
ggtgccgccgccctcctctccaccctcctgcccgaccgccgcaccgaccgcgtctatgcc
ctgcaggcccgcggcctccagcgcatcctcatccgcgctcttggtctcggccactctcgc
gtccctgaactctctcgctggatgcgcccctgcgatcatgccaccacgggacccgtggac
cttgccgactgcgtcgaggccatcctccagcggacacccaatcccacgcccaatgtaccc
gtcaccgtcgaggagattgacgccactttgcacggcgtcgctgcacgctgtcggttcagt
gcaccggctgttcggggacgacatacggcgcgcccgtcgaagaacgactttattgcgcct
ccgccgacgcaagatgccctcgcgcggctgtaccagcgcctcgacccgtgcggcgccaag
tggctgacacgcctgatcctcagagacctgaggccagccgtgctcgacggggcggtcgtg
gcgcgcgcctttcaccgcgccctgccgcaggctctgcaagtctttgcggatctcgaggcg
gcggtcgcgtccttatccggtgacaatgacattgtccgcccccgtctcggcgtcaaggtc
ggccgccagcaatgggccaaaggccgcagcatccagcactgcatcgccatgggcggtcca
caacggatgagctgtgagcacaagatggatggcgaatacgtgcaggtgcatgtgaacctc
gtcaacggaccggaccacaaagactgtcttcaactcttttcgaaaagcggcaaggacagc
acgtgggaccgcgtgaacctgcacagtgccatccgcgagtcgctgcgcctcgggcagcca
gactgtccaatcaccaaggggtgcatcctcgagggtgaaatgctggcgtacgacgagaag
gccgccaaaatcatggactttgatgccatccgcaagcacgtcaaccgcagcggatcgcgc
ctctactgcgacccgcgcggcgacacccaggaccacgagcacctgatgattgtctactac
gacgtcatgcttgttgatgacgagtcgttgctgagcaccagccgagaagaccgctttcgc
cgtttggagaagttggtcacatgccgcccaggctatgcggagcttgtcaagcgcgagatc
gtcgactttcgcgcccgtacggcaccggcccagctgcgccgcgcctttgcacggtgcatc
actgcccatctcgaagggcttgtcctgaagcccttgaaagatccgtactttgacctcaag
ggcccggggtcaggaactacctcgtccaccaccctcgagtggccgcaccttacctcctac
gtcatcaaactcaaaaagggctatattggcggcttcggcgaggtcggcgactttgctatt
gtcggtgcccgctacgatgcctgcaaagcgcgtgagtacccttccgacctgccagggctc
aaatggacgcactttttcatcgggtgccaggagacgcccaaggccggccagactcgaccg
cgctttgtcgtcaccaacgttgtgactctcacgccggcgcagatggccacctttttgcgc
cactgccggccgcgcgtcgttcccatgccacgcagaaccgacggacgaaagacacgaaac
acaagacgtgccacgtctacgcccggcgccgatggtggccaccgcgacacatgccctttt
gacctcgctcctctcgagcccggtctggacgacagcaaaggcggccctaccgacctcttt
gccgacccgcccgtcgtcgacattcgctgcttttcctttcaccgcccgggctacggccgc
ttctggagcccgcggtttcccagtgtcgtcaagttccactttgaccgcacgtgggccgac
acgctaccgtttgacgacctacaaaccatggccgtcgaagccgaggcgcgcacagctgtg
tacgacgacgacttttttgatgggccggacagtggcggcggcagcggcgggcctggtcct
gacgcgtacgatgcctcccagcacgcccattgggtcgcgcagctgaagcgtgccgataag
ggcggcatcgccatggatgccgaaacgagccagtcgcagtcgcagtcgcagtcgccttcg
caatcgacgacccgcagccagtcgtcatcaggatcgacacaacggacccagtcagccacg
agccagccgccgctgtcggctggtcttgggctgcctctgattgacattttggaagaagca
gaggcagaggacgaggacaagggcctctgcaaacaaagccagttgtccattgtcacagtc
aaaacatacgacgaaagatacgataagtatgagaaggcgaagctggcgaaggcgaagctg
gcgaaaccgaacctcgtcgtgtccgtcattgacctgacgggcgacacccaggagacggag
gtggcagaggagacagaaagggtcgtagcttcggttgaggaaagtacggtcaaaggaagt
actgtcgaagaagacgctgctgttggcaaaagagagatcttgcctggcgaaccctcgccg
ccaaggacacccaagcggagagcaacatcgcttcccctcatgggaacgtcgcccatgacg
cccaaaactccgccgcgcgtttccaactccccactgccgcccgcctcgtgctcgcccatt
gactttgtctccagtctgaccgcgccgtcgacggccgacggcagccaagcgtctggcagc
gatgagagccaaagcagtttggacggtttgggcagtcaggacagtttggagaagaacgcg
cacaggacgaaaagtctccctggcgacacgcccagccggaaacgattgcgagcctgggac
gccgccagcctcgacctctgccccgtttcgccgccgcagctcaagcgggcgcggagtggg
ctgtga
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integrated database retrieval system
