Scomber scombrus (Atlantic mackerel): 133976324
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Entry
133976324 CDS
T10651
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03450
Non-homologous end-joining
Brite
Enzymes [BR:
ssco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
133976324 (lig4)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
133976324 (lig4)
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GFIT
Other DBs
NCBI-GeneID:
133976324
NCBI-ProteinID:
XP_062270491
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Position
24:complement(12627600..12632615)
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AA seq
910 aa
AA seq
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MEGTSKSDPGVQLSVATQVPFLHLCVTLEKIQKAKVRPEKSKTLRDFIESWRKFHSALHK
DKPKTTDSFYPAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDTVAINNAGKQKDLVKKSLLHII
TQSTALEQKWLIRMILKDMKLGISKEIVLQVFHPDAAELYNVNTDLNKVCQQLHNPSVSL
SDVSIGLFSAFKPMLAAVANIRNVEKQMGNSPFYIETKLDGERIQLHKDGDVYKYYSRNA
FEYTQQFGGSPLAGSLTPYIHNVFKSHVVNCILDGEMMAYNPTAETFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLVNGQKLGKDTLKKRYETLQTVFTPVKGRMHLVPKTDGRTMQEVV
NALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYMDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAIAEAPKHGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIERIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLRIDNDEPQKKKRKVVAKPKKVVGLIDHFKSQDLSGIKKET
DMFEDVEFCILNGTEDHPKAELEKGVAKCGGIVVQNPGRDTYCVIAGVENMRVKNLISSN
QHDVVWAAWLLECLDQKQVVPWQPCHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLQE
VFNRIGGADTPAAVNVGQVEQRYGWDDLLTSMFRPFKAYMDSYADIGDPKSAIPTTYLNI
RALEFRYHGGTVVKKLEEGVSHVVIAEEARLLDLRTLRRSFRKKFKIVRDSWVTDSISEG
YLMNDNDYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttctaaaagtgatcctggtgttcagctgtctgttgctactcaggttcct
ttccttcacctgtgtgtcactttagagaaaatccagaaggcgaaagtccgtccagagaaa
tccaagacccttcgtgatttcattgaatcatggaggaagtttcattctgcccttcacaaa
gataagcccaaaacaacggactctttctatccagctatgcgcctcatagttccctctttt
gaacgagagcggatggcatatggcatcaaagagagcatgttggctaaactctacattgat
gtgttaggtctcccaaagaatggcccagaagccaataaactcttgaactatcgagctcca
accacatctcagggagaagctggcgactttgccggcatggcgtactttgtgctgaagaaa
cgttgcaccagccagggaaacctcagcatcaaagaagtcaatgactttctggatacagtg
gccatcaacaacgctggcaagcagaaggaccttgtgaaaaagagtcttctgcatatcatc
acacagagcacggctctcgagcaaaagtggctcatccgaatgattctgaaggacatgaag
cttgggatcagcaaagaaattgttctccaagtcttccatccggatgctgctgagctctac
aacgtaaacacagacttaaacaaggtctgccaacagctccacaacccctcggtgtcattg
agcgatgtctctattggactcttctctgcttttaaacccatgttggcagctgttgctaac
atccgcaatgtagagaaacagatgggaaacagccctttttacattgaaaccaagctggat
ggggagcgaatacaactacataaagatggagatgtgtacaagtactatagccgaaatgct
tttgaatacacacagcaatttggaggatccccactggcgggttctctcacaccttacatc
cacaacgtttttaaaagccatgtcgtgaactgtatcctcgacggagagatgatggcgtac
aacccgaccgctgagacattcatgcagaaagggagcaaatttgacatcaagaggctaatg
gatgactctgagttacaaacatgcttctgcgtgtttgacgtgctgttagtcaatggccaa
aagcttggaaaggatacattgaagaaacgctacgaaaccctgcagacagttttcacccca
gtcaagggaaggatgcacctggtgccaaagacggacggcagaaccatgcaggaggtggtg
aatgccctcaatgacgccatagacaacagagaggaggggatcatggtgaaggatccttta
tccatctacaaacctgacaagcgtggggagggatggctgaaaataaagccagaatatatg
gatggcttgatggatgagcttgacctgctgattgtcggtggctactgggggaaagggaga
cggggtggtatgatgtcccatttcttatgtgccattgccgaagctccaaagcatggtgag
aaaccttcggttttccactcattctgccgcatcggctctggctacaccatgaaggagttg
tatgaccttggtttaaaactagccaagcactggaaggtctaccgcaaaaatgacccacca
gcttccatcctgtgtggaacagagaaaccagaagtctacatcgaaccctgcaactcggtc
atcatccaggtcaaggcggccgagatagtcggaagtgacatgtataaaaccaactgcacc
ctccgtttccccagaattgagaggatccgcgacgacaaggagtggcaccagtgcatgact
ctggcagagctggatcagtttcgcagcaaggcgtcgggaaaactcgcctcgcggcatctt
cgcatcgacaacgacgaaccacaaaagaagaagcgcaaggtggtagccaaacccaagaag
gtggtcgggctcatcgaccactttaagtcccaagacctctccgggattaaaaaagagaca
gatatgtttgaggatgtggagttttgcatcttgaatgggactgaagatcacccaaaagct
gagctggaaaagggtgtggccaagtgtggaggtatcgtggtacaaaatcctggacgggac
acctactgcgtgatcgccggcgtggagaacatgcgtgtgaaaaacctgatttcgtccaac
cagcatgacgtggtgtgggccgcctggctgctggagtgcctggaccagaagcaagtggta
ccatggcaaccctgccacatgatccacatgtcgccatccaccagggaacacttcgccaaa
gagtacgacagctacggcgacagctactttgtggacacggacgagcagcagctacaggaa
gtgttcaaccgcattggaggtgcggacacaccggcggccgtgaacgttggccaggtggag
cagcgatacggttgggatgaccttctcaccagcatgttcagacccttcaaggcttacatg
gacagttacgctgacataggagaccctaaaagtgctatacccaccacctatttgaacatc
agggcgctggagtttcgttaccatggaggcacggtggtgaagaagttggaggaaggagtg
tcccatgttgttatcgcagaggaagcaagacttctagatttgaggactctgaggcgcagc
tttaggaagaagtttaagattgtaagagactcatgggtgaccgattcaatcagtgaagga
tatctgatgaatgacaacgactacttagtttga
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