KEGG   Scomber scombrus (Atlantic mackerel): 133976948
Entry
133976948         CDS       T10651                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, A-U alpha chain-like
  KO
K06752  MHC class II antigen
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04145  Phagosome
ssco04514  Cell adhesion molecules
ssco04672  Intestinal immune network for IgA production
ssco05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    133976948
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    133976948
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    133976948
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    133976948
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssco04147]
    133976948
Exosome [BR:ssco04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   133976948
  Exosomal proteins of epithelial cells
   133976948
  Exosomal proteins of breast milk
   133976948
SSDB
Motif
Pfam: MHC_II_alpha C1-set C2-set_3 Ig_3 Env-gp36 I-set
Other DBs
NCBI-GeneID: 133976948
NCBI-ProteinID: XP_062271069
LinkDB
Position
Unknown
AA seq 246 aa
MMKMMMKVMKVSELLLILSYVLGVSFCAVVHQDLAITGCSSSDGEDMYGLDGEELWYADF
IKREGVYPLPPFIDPFRYPDDTYQQAETNQQICKDNLKTVGNAMKEIPLENDPPSSHIIY
KRDKVELGVQNTLICHVTGFYPAPVKVYWTKNAKNVTEGTSINVPYPNKDGSFRQSSRLE
FIPQLGDMYSCSVAHPTLSQPLTRIWDVEVQQPGVGPAVFCGLGLTIGLLGVAAGTFFLI
KGNECS
NT seq 741 nt   +upstreamnt  +downstreamnt
atgatgaagatgatgatgaaggtgatgaaggtgtcggagctgctcctcatcctctcctat
gtcctcggtgtctccttctgtgcagtagttcatcaggatcttgctatcaccggatgttca
tcctctgatggagaggacatgtacggactggatggagaagagttgtggtacgcagacttc
atcaaaagagaaggagtttaccctctgcctcccttcattgatcctttcaggtacccggat
gatacttatcaacaagctgagactaatcaacagatctgcaaagataacctgaagaccgtt
ggtaatgctatgaaggaaatcccactggaaaatgatcctccttccagtcacatcatctac
aaaagagacaaggtggagctcggagtccagaacacgctgatctgtcatgtgaccggtttc
tatcctgctcctgttaaagtctactggaccaagaacgcaaagaacgtgaccgaaggaacc
agcatcaatgttccttaccccaacaaagatggttccttcagacagtcctccagactggag
ttcatcccacagctgggagacatgtacagctgttcagtggcacacccaacactgagccaa
ccactgaccaggatctgggatgtggaggtgcagcagccaggtgttggacctgcagtgttt
tgtggactgggtctgactatcggtctgctcggtgtggcagctggaaccttcttcctcatc
aaaggaaacgagtgcagctga

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