KEGG   Scomber scombrus (Atlantic mackerel): 133977152
Entry
133977152         CDS       T10651                                 
Name
(RefSeq) RLA class II histocompatibility antigen, DP alpha-1 chain-like
  KO
K06752  MHC class II antigen
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04145  Phagosome
ssco04514  Cell adhesion molecules
ssco04672  Intestinal immune network for IgA production
ssco05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    133977152
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    133977152
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    133977152
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    133977152
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssco04147]
    133977152
Exosome [BR:ssco04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   133977152
  Exosomal proteins of epithelial cells
   133977152
  Exosomal proteins of breast milk
   133977152
SSDB
Motif
Pfam: C1-set MHC_II_alpha Ig_3 C2-set_3 C2-set_2 I-set Ig_2
Other DBs
NCBI-GeneID: 133977152
NCBI-ProteinID: XP_062271268
LinkDB
Position
Unknown
AA seq 247 aa
MMKMMMKVMKVSELLLILSCVLGVSFCAENLHEDLRINGCSDSDGESMYTLEGEELWYAD
FNNNRGVYPLPDFSNSFRYEDGTYEQAKTNQQICKDNLKKSRNAMKNIPLESDPPSTPII
YSRDEVELGVQNTLICHVTGFYPAPVKVYWTKNGKNVTEGTSINVPFPNKDGSFRQSSRL
EFIPQLGDMYSCSVAHPTLSQPLTRIWDVEVQQPGVGPAVFCGLGLTIGLLGVAAGTFFL
IKGNECS
NT seq 744 nt   +upstreamnt  +downstreamnt
atgatgaagatgatgatgaaggtgatgaaggtgtcggagctgctcctcatcctctcctgt
gtcctcggtgtctccttctgtgcagaaaatctacatgaggatcttcgtatcaacggctgt
tcagactctgatggagagagcatgtacacactggagggtgaagagttgtggtacgcagac
ttcaacaacaacagaggagtttaccctctgcccgacttttcaaatagtttcaggtacgag
gatggaacttatgaacaagctaagactaatcaacagatctgcaaagacaatctgaagaag
agtcgtaatgctatgaagaacatcccactggaatctgatcctccttccactcccatcatc
tactccagagacgaggtggagctcggagtccagaacacgctgatctgtcatgtgaccggt
ttctatcctgctcctgttaaagtctactggaccaagaacggaaagaacgtgaccgaagga
accagcatcaatgttcccttccccaacaaagatggttccttcagacagtcctccagactg
gagttcatcccacagctgggagacatgtacagctgttcagtggcacacccaacactgagc
caaccactgaccaggatctgggatgtggaggtgcagcagccaggtgttggacctgcagtg
ttttgtggactgggtctgactatcggtctgctcggtgtggcagctggaaccttcttcctc
atcaaaggaaacgagtgcagctga

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