Scomber scombrus (Atlantic mackerel): 133982925
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Entry
133982925 CDS
T10651
Symbol
si:ch73-22o12.1
Name
(RefSeq) nectin-2 isoform X1
KO
K06531
poliovirus receptor-related protein 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03266
Virion - Herpesvirus
ssco04514
Cell adhesion molecule (CAM) interaction
ssco04517
IgSF CAM signaling
ssco04520
Adherens junction
ssco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
133982925 (si:ch73-22o12.1)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
133982925 (si:ch73-22o12.1)
04517 IgSF CAM signaling
133982925 (si:ch73-22o12.1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
133982925 (si:ch73-22o12.1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133982925 (si:ch73-22o12.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133982925 (si:ch73-22o12.1)
04090 CD molecules [BR:
ssco04090
]
133982925 (si:ch73-22o12.1)
Cell adhesion molecules [BR:
ssco04515
]
Immunoglobulin superfamily
Nectin family
133982925 (si:ch73-22o12.1)
CD molecules [BR:
ssco04090
]
Proteins
133982925 (si:ch73-22o12.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2-set_2
ig
V-set
Ig_3
I-set
Ig_2
Ig_PVRIG
TM_ErbB1
Aminotran_3
DUF4342
PycTM
Motif
Other DBs
NCBI-GeneID:
133982925
NCBI-ProteinID:
XP_062277789
LinkDB
All DBs
Position
7:20303632..20383686
Genome browser
AA seq
526 aa
AA seq
DB search
MARHDARNWHDCTKMTRLFLVASILLLQGASGQRVKVEPEVTSYPGQTVNLRCAFTDATG
IQLTMVTWIYEPKEGERLNIAVFHPNFDPNYPDSPVKGRVSFTPSPPSLTSPSIQISNVG
MTDEGKYICEYATYPSGNEQGITYLVMLAKPQNSATIVTVDAGTKPVVVARCESKDGRPA
AQISWVTTANGNATTVSKPGTDNTVTVTSEYRMVPTAKDNGKDISCVVSHRTQVKPDSHA
MKLAIQYAPQVSITGYDNNWYVGRTNVVLTCQATGNPVPVTVQWKTMTGEMPDTVQIKDN
QLKVLKVDDAVNTTFVCEVKNRIGTGKDQVTAIVREPSVNPSNAGVVAGAVIGSLLALLL
VAALIAVLVTRSRRQQQGYRGNGGSDMKTRIFGGGKKASKNGTGGGAGSGGVGGGNNNGP
IYVYNESSPHQGLGEKNNHHQPLTIGGVATTPTAQDILLSNDLDDAERRKFDELEEDERY
DHFTGGAPILQLRPPHDQDDIIGDYMDDDMESQRDGSVISRTAVYV
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggcgagacatgacgcccgaaattggcatgactgcactaaaatgaccagactgttcttg
gtcgcgtcgatacttttactacaaggggcgtcgggtcagagggtcaaggtggagccagag
gtgacgtcgtatcccggtcagacagtcaaccttcgctgtgccttcactgatgccactggg
attcagctcacaatggtcacatggatctatgagccaaaggaaggagaaaggctcaatata
gctgtgtttcacccaaactttgatcccaactacccggattcacctgtgaagggtagagtc
agcttcacacccagtccccccagcctgaccagtccttccatccagataagcaacgtgggg
atgacagacgaggggaagtacatctgcgaatacgctacctaccccagtggcaacgagcag
ggcatcacctacttggtcatgctcgctaagcctcagaactcggccaccatcgtaacagtg
gacgcaggcactaagccggtcgttgtggcacgatgtgagtctaaggatggccggcccgct
gcccagatctcttgggtgaccacagccaatggcaacgcaacaacagtgtctaagccaggt
acagacaacactgtgacagttaccagcgagtaccgcatggttcctacagcgaaagacaac
ggaaaagacataagctgcgtggtgtcacacaggacgcaggtcaaaccagacagccatgcg
atgaaactggcaattcagtatgcccctcaggtgtcaataactggttatgacaataattgg
tacgtgggtcgtacaaatgtggtgctcacctgccaagctaccggaaaccccgtcccagtc
accgtacaatggaagactatgactggagagatgccagacacggtccagattaaagacaac
cagctgaaggtactgaaggtggatgatgcggtcaacaccacttttgtctgtgaggtcaag
aaccgcataggaaccggcaaggatcaggtcacagccatagtcagggagccctcagtgaac
ccatccaatgccggcgtggtggcgggggctgtgattggctccctgctggccctccttttg
gtcgccgctctcatcgccgtgcttgtcacccgtagccgaaggcaacagcagggttaccga
ggcaatggcggcagtgacatgaagacacgcatatttggtggcggcaagaaggctagcaag
aacggcacaggtggaggcgcaggcagcggtggcgttggaggcggtaacaacaacggcccc
atctatgtttacaacgagagttccccccaccagggccttggcgagaaaaacaaccaccac
cagccactcaccattgggggcgtagccactacacccactgcccaagacatcctgctaagc
aatgacctggatgacgcagagaggaggaagtttgatgagcttgaggaagacgagaggtat
gaccacttcaccggaggcgcccccatccttcagcttcgcccacctcatgatcaggacgat
attattggagattacatggatgatgacatggagtcccagcgggatggctctgtcatctca
cggactgctgtctacgtatag
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