Scomber scombrus (Atlantic mackerel): 133983034
Help
Entry
133983034 CDS
T10651
Symbol
arhgef1b
Name
(RefSeq) rho guanine nucleotide exchange factor 1b isoform X1
KO
K12330
Rho guanine nucleotide exchange factor 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04270
Vascular smooth muscle contraction
ssco04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
133983034 (arhgef1b)
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
133983034 (arhgef1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133983034 (arhgef1b)
Membrane trafficking [BR:
ssco04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
133983034 (arhgef1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PH
Motif
Other DBs
NCBI-GeneID:
133983034
NCBI-ProteinID:
XP_062277936
LinkDB
All DBs
Position
7:21171509..21213702
Genome browser
AA seq
1013 aa
AA seq
DB search
MDAEDAHFGWGFSGALCSNPAMSIIGAEDEDFENDLKEGKAGEDLNSHFNNIDHLREHPA
HLLVFMQHVILQFDPAPLLCYLHADLFKTLNAKETKKQFVEFCNTFCDKGAILKVQTSPT
FPYDLDRIRLDLGNEDILRRYVQDLQGTLAAEVANQLDDFRQKRMMGMTPCESELMDVEN
HHSTDRIPTEMKEKSVAEVMLEKMSETQLTIVADEEKCQSIFSAVAFYMKHLGVKTRTVD
SKKSRGGFFRSKLVKSKKDESTKTKQRGGFPSIPWIGSNPEVKPKTETEVDKEKVNQERK
GPVPSRSSLTDPTAPSLGSRKSCSGGGLPSLPGLDVSDCSGNNTSMTNNQESLHTDDLSS
IRLEPPTLSVRGDTTPVGLAGGLTVGEPVTPSDTPTEENLEKDSFEGTNLVPEGPGPSPT
SPSPHLEEVDPRFAELEQDPPNWRELASPEALSKLSKKETKRQEVINELFATEHAHVRML
IVLQTVFSRPLEKEELLSTHETDAIFPSLDDIIEMHSTFYENLKKLRLEEGYIVKSISTT
VLNRFGGTEGEWFQKLTARFCSHQSWALDQIKSRQKKDPRFNLFILDAESRRECRRLQLK
DIIPIEMQRLTKYPLLLENIAKNTEDSSERESIQQSAECCRKVLDHVNEEVKVMENLLTL
KDYQRRLDTSGLKPSTDLYTEYKNIDLTQKIMLYEGPLTWRITKEKTIEVQCVLLADMLV
LLQKQDDKMVLKCQSKSNIAVQEGKQMLSPIIRLDSAFPREVATDRKAFYVIFTWDSGAQ
IYELVAQSVGDRKTWTEVIKSAMDDLKKSGAPMKLALPPGGAVGVTPAPLSPSIPDPLSP
KTPIPLSPTENGSLKSSSSDRDKDSLPGDKSTIHEKVADSALDEVMSLKRLLISRISLSE
NSQNDGENGEEQSEKPSQEMDSCQSTEEHIQTTDRAAEEENDDSCEKEVAETDGEEEKSI
SAPLVLSQEQMEEVRRRLQSLEEKIKRLQTVEEDHHRLRESLSKFTQIGGVFQ
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgaagatgcccacttcgggtggggtttttctggggctctgtgctctaaccca
gccatgagcatcatcggggctgaggatgaggacttcgagaatgacttgaaggaagggaag
gcaggggaagacctgaactcacacttcaacaacatagatcatttgagggaacacccggcc
cacctgctggtcttcatgcaacatgtcattctacagtttgaccctgcgccactgctgtgt
taccttcatgctgacctcttcaagaccctcaatgccaaagagaccaagaagcagtttgtg
gagttctgcaacaccttctgtgataagggtgctattctcaaagtgcaaacatcacctact
tttccttatgatttagaccggattcgactagatttgggcaacgaggacatcctaaggcgc
tatgttcaggatctccagggaacgctggctgctgaagtggcgaaccagcttgacgacttt
aggcagaagagaatgatgggcatgaccccttgtgagtctgagctgatggatgtggagaac
caccattccaccgaccgcatccctacggagatgaaggagaagtctgtagctgaggtcatg
ctggaaaagatgtctgagacacaacttaccattgtcgcggacgaggaaaaatgccaatcc
atcttttcggcggtggccttctacatgaagcacctcggggttaaaactaggacagttgac
agtaagaagtccagaggaggcttcttcaggagtaaactggtaaagagtaagaaggatgaa
tccactaagaccaagcaaagggggggcttccccagcatcccctggattggaagcaaccct
gaggtcaaacctaaaacggaaactgaagtggataaggagaaagtcaatcaggagcgtaaa
ggtccagttcccagcagatcctccttgaccgaccctacagccccttccctcggcagcagg
aagtcatgttctggtggaggcctcccctccctgcctgggttagacgtcagcgattgctca
gggaacaacaccagcatgaccaacaaccaagagtctttacacaccgatgatctctcaagc
attcgcttagagcctccaaccttatcagtccggggtgatacgacccctgttgggctggca
ggtgggctgactgttggggagcctgttacacccagcgacactcccacagaggagaatctg
gagaaagacagttttgaagggacaaatttagtccctgagggtcccggcccgtcccctacc
agtccctccccacacctggaagaggtagacccgcgcttcgcagagttagagcaggacccg
cccaactggagggagctggcctcccctgaagccctgtccaaactcagcaagaaggagacc
aagagacaggaggtcatcaatgagttgtttgctacagaacatgcccatgtgcggatgtta
attgtccttcagacggtcttctccaggccattggagaaagaggagctcctatctacccat
gagactgacgccattttcccaagccttgatgacatcattgaaatgcacagtaccttctat
gagaacctgaaaaaactgcgtttggaagaaggctatatagtcaaatccatcagcaccaca
gtactcaacagatttggtggtacagagggggagtggtttcagaaactgacagctcgattc
tgcagtcaccagtcatgggccctggaccagatcaagagcaggcagaagaaagatccacgc
ttcaacttatttatactggacgcggagagtaggcgtgaatgccgcaggctgcagctcaag
gacataattccaatagagatgcagagactgaccaagtacccgctgctgctggagaatatt
gctaagaacacagaggactcgtcagagagggagagcatccagcagagtgcagagtgctgc
agaaaggtcctcgaccatgtcaatgaggaggtcaaagtgatggagaacctattgactctg
aaggactaccagcgcagactggacacatcagggctcaaaccaagcactgacctttatact
gaatataagaacattgatctgactcagaagataatgctttatgaaggccctctgacttgg
agaatcaccaaggagaagactattgaggtgcagtgtgtgttgcttgcggacatgctggtg
ctccttcagaagcaggacgacaagatggtcctcaaatgccagagcaagagtaacatagcc
gtgcaggagggcaagcaaatgctgagcccaattatcaggctggactcagctttccctcgt
gaggtggccacagatcgaaaggccttttatgtgatatttacctgggacagcggtgctcag
atctacgaactggtggctcagtctgttggcgacaggaaaacctggactgaagtgataaag
tcagcaatggatgatctgaagaagagtggagcacctatgaagttggcactgcctcctgga
ggtgctgtaggtgtcactcctgccccgctcagtccatcaatcccggaccctctgagcccg
aagacgcctatccctctgagcccgactgagaatggaagtttaaaaagcagcagcagtgat
cgagataaggacagcttgccgggtgacaagtcgacaatccatgagaaggtggctgatagt
gctttggatgaagtcatgtcgctaaaaaggctgttgatcagtcgcatcagtctatcagag
aactcgcaaaatgatggagaaaatggagaggagcaatcagaaaagccaagtcaagaaatg
gatagctgtcaatcaacagaagaacacattcagaccacagacagagcagcagaggaggag
aatgatgactcttgtgagaaagaagttgcagagacggatggagaggaagagaagagcatc
agtgcacccctggtgttgtcccaggaacagatggaggaagtgcgcaggaggcttcaaagt
ctggaggaaaaaataaagagactacagactgtagaagaagaccaccacaggctgcgggag
tcactttccaagttcacacaaattgggggtgtcttccagtaa
DBGET
integrated database retrieval system
