Scomber scombrus (Atlantic mackerel): 133984473
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Entry
133984473 CDS
T10651
Symbol
ptprfa
Name
(RefSeq) protein tyrosine phosphatase receptor type Fa isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04514
Cell adhesion molecules
ssco04520
Adherens junction
ssco04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
133984473 (ptprfa)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
133984473 (ptprfa)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
133984473 (ptprfa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssco01009
]
133984473 (ptprfa)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133984473 (ptprfa)
Enzymes [BR:
ssco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
133984473 (ptprfa)
Protein phosphatases and associated proteins [BR:
ssco01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
133984473 (ptprfa)
Cell adhesion molecules [BR:
ssco04515
]
Immunoglobulin superfamily
Type II RPTP family
133984473 (ptprfa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
ig
fn3_2
Interfer-bind
PTP-SAK
Tc-R-P
V-set
Fn3_VIN3
DSPc
Y_phosphatase3
C2-set_2
PTPlike_phytase
PTP-NADK
Fn3_PTPRU
Ig_C17orf99
Insulin_TMD
Fn3_ELFN
DUF5849
TMEM154
Motif
Other DBs
NCBI-GeneID:
133984473
NCBI-ProteinID:
XP_062279797
LinkDB
All DBs
Position
8:complement(1592076..1830068)
Genome browser
AA seq
1874 aa
AA seq
DB search
MPGFIKSPDDQTGISGGVASFVCQAVGEPKPRITWMKKGKKVSSQRFEVIEFDDGSGSVL
RIQPLRTHRDEAIYECTATNSVGEINTSAKLTVLEEDQIPHGFPTIDMGPQLKVVEKTRT
ATMLCAASGNPDPEIYWFKDFLPVDISSTNGRIKQLRSGALQIENSEESDQGKYECVAVN
SAGTRYSAPANLYVRVRRVPPRFSIPPTNHEVMPGGSVNLTCVAVGAPMPYVKWMSGEVE
LTREEEMPIGRNVLELTNIRQSANYTCVAISSLGMIETTAQITVKALPKPPTSLIVTETT
ATSVTLTWDSGNPEPVSYYVIQYRAKLSDNGFQEVDGVATTRYSIGGLSPYSEYEFRVMA
VNNVGRGPPSGIVDTRTSEQAPSSPPLLVQARMLSSSTMLVQWEPPEEPNGQIRGYRVYY
SSDHDAPLSAWQKHNTDDSQLTTISGLTTDITYSMRVLGFTSVGDGPPSDVLQIKTQQGV
PAQPAGFDAEAELDSRIMLSWLWPVQDPIVSFELLYWEANNPGDKHRVTFNPAPSYAVDG
LKPDTLYMFSLAARSEMGLGVFTQPIEARTAQSTPSAPPQEVHLLSLSSTSIKVSWVAPP
TDSRHGEIVRYSLAYQAVTGEDMERHEVSGIGADVTSYVLEDLEKWTQYLVWVRAHTDVG
PGPESPAASIRTQEDVPGAPPRKVEADALNSTALRVTWKPPLSVKQHGQIRGYQLVYSRL
ENGEPHGQPLIMDVSLPEAQWTDEDSADYEAIITGLLPETSYSVTVAAYTTKGDGARSKA
KVVTTSGAVPGRPTMMISTTIGNTALIQWQPPKEMVGEHVGYQLQYKRAEEEAFTVKDFR
KIDDHFTVTGLHKGATYIFKLCAKNRAGNGEEYVKEIITPEDIPTSYPQNLSVVGLTATS
TKLAWDPPPLAERNGRIVKYAVVYRDINSQHNITNTTTETQMTVQGLQPDTTYDIRVQAF
TSKGAGPISPSIQSRTMSTTMPVFTKNFGVKAVMKTSVLLTWDVPETYKSQVPLKILYNQ
QSVEVQGDLKRKLITQLQPDTDYSFVLMSRGNSAGGLQQQVSIRTAPDLLKIKPAQYQHD
VEEGGKVTISLPRVPAGAPVRWYYIVVVPVTPASLRRWENPEDMDIHELLEAGVNSSLQR
KKRQSQEFLQPYIAAKLDALPDVFTLGDEKEYNGYYNKPLPGQQQYRCFVLADLTDHESQ
RTFAASPFSEPIMVKLHSGMTRHTEDPEMLWVMGPVLAVILIIIIVIAILLFKRKRTSPS
TKDEHMAGVKDSLLAHSSDPVEMRRLNYQTQGMREHPPIAISDLADHIERLKANDGLRFS
QEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVILTPVDGVPGSDYINANYIDG
YRKQNAYIATQGPLPETLSDFWRMMWEQRTCTIVMMTRLEEKSRVKCDQYWPSRGTETYG
MIQVTMLDTVELATYSVRTFALYKNGSSEKREVRQFQFMAWPDHGVPEYPTPTLAFLRRV
KACNPPDAGPMVVHCSAGVGRTGCFIVIEAMLERMKHEKSVDIYGHVTCMRAQRNYMVQT
EDQYIFIHEALLEAATCGITEVPARNLYAHIQKLTQIPAGDTVTAMELEFKKLANSKAHT
SRFISANLQCNKFKNRLVNIMPFESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYMATQ
GPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYN
MPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDG
PITVHCSAGVGRTGVFITLSIVLERMRYEGVVDLFQTVKTLRTQRPAMVQTEDQYQLCYR
AALEYLGSFDHYAT
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcttcatcaagtccccagacgatcagacagggatttcgggaggagtggcgtcg
ttcgtatgccaggcggtgggcgaacccaaacctcgcatcacctggatgaagaaggggaag
aaagtcagctctcagcgctttgaggtgattgagtttgatgatggttcggggtcggtgctg
cgtatccagcctttgaggacccaccgcgatgaagccatctacgaatgcaccgccaccaac
agcgtgggagagatcaacaccagtgccaagctcactgtcttagaagaggaccagatcccg
catggtttccccaccatcgacatggggccccagctgaaggttgtggagaaaacgcgtaca
gctacaatgctgtgtgctgccagcggcaaccctgacccagagatctactggttcaaagac
ttccttcctgtggacatcagcagcaccaatgggcgcataaaacagctgagatcaggagcg
cttcagattgagaacagcgaggagtcagaccagggcaagtacgagtgtgtggcagtcaac
agcgctgggactcgctactcggctccggctaacctttatgttcgagttcgtcgtgtgcct
ccccgtttctccatcccccccaccaatcacgaggtgatgcccggcggaagcgtcaacctg
acctgcgtggcggttggtgctcccatgccttatgtgaagtggatgagcggtgaggtggag
ctgaccagggaggaggagatgcccatcggccgcaacgtactggagcttaccaacatccga
cagtcagccaactacacctgtgtggctatttcctctctgggcatgatcgagaccaccgcc
cagatcactgtcaaagcgctgcccaagcctcccacctccctcattgtgacagagaccacg
gccaccagtgtcaccctgacctgggactctggcaacccagagccagtgtcctactatgtg
atccagtaccgcgccaaactttcagataatggcttccaggaagtagacggggtagcaacc
acccgttacagcatcggaggcctcagcccatattcagaatatgagttccgtgtcatggcc
gtcaacaacgttggtcgcgggccgcccagcggtatcgtggacacccgtacaagcgagcag
gcaccctcatcgcctcctcttctcgtccaggcgcgcatgctgagctccagcaccatgctg
gtccagtgggaacctccggaggagcccaacgggcaaatacggggctaccgggtctactac
agctctgaccacgacgccccactcagcgcctggcagaaacacaacacagacgacagccag
ctcaccaccatctcaggcctgaccacagacatcacctacagtatgagggtgctgggcttc
acctctgttggtgatggacctccctctgatgttctccagatcaagacccagcaaggagtt
ccagcccagccggctggttttgatgctgaagctgagctggactcacgcatcatgctgtca
tggctttggcctgtccaagaccccattgtcagcttcgagctgctctactgggaggccaat
aatcctggggacaagcatcgtgtcacttttaacccagcgccctcctatgcagttgacggt
ctgaagccagacacactctacatgttttccctggcagcacgatctgagatgggtttagga
gtctttactcagcctattgaggccaggacggcccagtccaccccttcagcccctcctcag
gaggtacatttgctcagcctgagctccaccagcatcaaggtgagttgggtggcgccaccc
acagacagccgccacggggagatagtacgctactccctagcctaccaagcagtcacagga
gaggacatggagcgccacgaggtgtcagggattggtgcggatgtcaccagctacgtgctg
gaggacctggagaagtggactcagtatttggtgtgggtgagggctcatactgatgttggg
cctggccctgagagccccgcagccagcatcagaacacaggaagatgtgcctggagctcct
cccaggaaggtggaggctgacgccctcaactccactgccctcagggtgacctggaagcct
ccactgtctgtgaagcagcatggccagatcagaggctaccagctggtctactccaggcta
gagaacggggagcctcacggccagccactcatcatggatgtttccctccctgaagcccag
tggactgatgaggactcagcggactacgaggccatcataacaggtctgctcccagagacc
agctactctgtaactgtggcagcttataccaccaagggagatggagctcggagcaaggcc
aaggtggtcaccacctcaggagcagtccctggcagacccaccatgatgatcagcaccaca
atagggaacactgctctgatccagtggcagcccccaaaagagatggtgggggagcatgtg
ggataccagctacagtacaagagagcagaggaggaagcttttactgtcaaagacttcaga
aagatagatgatcatttcactgtcaccggtcttcacaaaggagccacctacatcttcaaa
ctctgtgccaaaaaccgagctggcaacggggaggaatacgtgaaggagatcatcacccct
gaagacattcctaccagctatccacagaatctgagcgtggtaggcctgaccgccacttct
accaagctggcctgggacccgcctcctctggctgagaggaacgggaggattgtcaagtat
gcggtggtgtatcgagatatcaacagccagcacaacatcaccaacactaccacagaaaca
caaatgactgtccagggtttgcaacctgacaccacctatgacatcagagttcaagccttt
accagtaagggggcaggacccatcagccccagcatccagagtaggacaatgtccaccacc
atgccagtgttcaccaagaactttggtgtgaaggctgttatgaaaacctctgtcctgctg
acctgggatgtgccagaaacctataaatcccaagtgcctctcaagatcctatacaaccag
cagagtgtggaggttcaaggcgacctgaagaggaagctgatcacacagctgcagccggat
actgattactccttcgtgctgatgagccgggggaacagtgccggaggactacagcagcag
gtttccatccgaaccgctccagacctgctgaagattaaacctgcccaataccaacatgat
gtggaggagggtggtaaagtgaccatcagtctgcccagggtccctgctggagcccccgtc
aggtggtactacatagtggttgtccctgtcaccccagcttctctgaggagatgggagaac
cctgaagacatggacatacatgagctcctggaggctggtgtcaacagtagtctgcagaga
aagaagagacagagccaggaattcctgcagccatatattgctgccaagctggacgctctg
cctgatgtcttcactctgggtgatgagaaggaatacaatggctactacaataaaccccta
ccaggccagcagcagtaccgctgctttgtcctggctgacctgacggaccacgagtctcag
aggacgtttgcagccagcccgttctctgagcccatcatggtgaagctccacagcgggatg
acccgacacactgaggacccagagatgctgtgggtgatgggtccagtgctggccgtcatt
ctcatcatcatcatcgttattgctattctactcttcaagaggaaacgaacttctccttca
accaaggacgagcacatggcaggggtgaaggactcgctgctggcccactcctcggaccct
gtggagatgaggagactcaactatcagacacaagggatgagggaacatcctcctattgcc
atcagcgacctggcagaccatatagagagactcaaggccaacgacggtctgcgcttctct
caggagtatgagtccattgatccaggacagcagttcacatgggagcactccaacctggag
gtcaacaagccaaagaatcgctatgcaaacgttatcgcctacgaccactccagggtcatc
ctcacacctgtggatggagttcctggtagcgactacatcaatgctaactacattgatggc
tacaggaagcagaatgcttacatcgctactcaagggccactgccagagacgctgagtgac
ttctggaggatgatgtgggagcagaggacctgcaccattgttatgatgacccgcctagag
gaaaagtcacgggtgaagtgtgaccagtattggcctagtcgaggcacagagacatatgga
atgattcaggtgaccatgctggacactgtggagctggccacatacagtgtgcggaccttt
gccctctataagaatggctcaagcgagaagagagaagttcgacagttccagtttatggcc
tggcccgatcatggagtgcctgagtatcccaccccaacactggcctttctacgcagagtc
aaggcctgtaaccctccagatgctgggcccatggtggtccactgcagtgccggcgtgggt
cgaacaggctgcttcattgtgatcgaagccatgctggagaggatgaaacatgagaagtct
gtcgacatttacggccatgtgacgtgtatgcgagcccagaggaactacatggtgcaaaca
gaagatcagtacatattcatccacgaggctctgctagaagctgccacatgtggcatcaca
gaagtccctgcccgcaacctgtacgcacacatccagaagctcacccagatccccgctgga
gacaccgtcaccgccatggaactggagtttaagaaactggctaactctaaagcacatacc
tcaagattcatcagtgccaacctgcagtgtaacaagttcaagaaccgcctggtgaacatc
atgcctttcgagtccacccgcgtctgcctgcagccaatcagaggggtggagggctccgac
tacatcaacgccagcttcatcgacggatacaggcaacagaaagcgtacatggccacacag
ggcccgttagctgagaccacagaggacttctggagaatgttgtgggagcacaactccacc
atcgtagtcatgctcaccaaactccgcgagatgggacgggaaaagtgccatcagtactgg
cctgctgagcgatctgcacgctaccagtactttgttgtggaccccatggctgagtacaac
atgcctcagtacatcctgagagagttcaaagtcacagacgccagggacggtcagtcgagg
accatcaggcagttccagttcactgactggccagagcaaggagtgccaaaaactggtgag
ggattcatcgacttcatcggccaagtccataaaactaaggagcaatttggacaagatgga
ccaatcactgtgcactgcagtgctggtgttgggcggactggtgtgttcatcaccctgagc
attgtgctggagaggatgaggtatgagggggtggtcgacctcttccagaccgtcaagacg
ctccgaactcagaggccggccatggtgcagacagaggaccagtaccagctgtgctaccgg
gctgctctggagtatctgggaagctttgatcactatgcaacataa
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integrated database retrieval system
