Scomber scombrus (Atlantic mackerel): 133985674
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Entry
133985674 CDS
T10651
Name
(RefSeq) protocadherin gamma-C5-like isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Protocadherins
133985674
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Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133985674
NCBI-ProteinID:
XP_062281318
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Position
9:complement(17200220..17411449)
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AA seq
989 aa
AA seq
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MDSRQRKRSRGGRQLSRLCFYLACLSCASAQLSYSVSEELSPGSIVGNIAKDLTLTIQRI
VQRRLRVVSESNTQYFEVKQATGDLVIKQKIDREQLCESSATCSLHLEILLEDPLEIQRV
VVDILDVNDNAPLFSTSNISLEISEAAVPGTRFRLESAHDPDVGTNSLRTYHLAANDFFT
LNVETKSDGSKFPELVVDKALDRETQASFRLLLTAVDGGQPEKSGSTLMLIKILDVNDNV
PVFDEPVRKVSLLENVALGTLVTKLNATDADSGHNGEISFLFSKYTPERVLKLFSVDPKS
GEIRVKGDVDYEKGNAYHITVQARDGGSPAMEGSCNVIVDITDVNDNKPEVTLTKLTSPI
KEDSTPETVIALISARDLDSGMNGKVTLSVQQGLPFKLNSAFGMHYSLTTAGKLDRETVP
EYTVVIKATDAGSPPLSSQTTFVVKIADVNDNAPIFSQPSYSVDIPENNAPSTPITTVLA
TDPDLGDNARITYSILPSMVQGSTISSYVYINPESGHIYSMRSLDHEQLNAFRIEVQARD
AGVPVLTTNITVHVFVVDTNDNAPVIVHPAYPKDKGLQLTVPPSAGPGYLVNKLVGVDAD
SGHNAWLFYSIAPGPNAGMFRIGAHTGELRTARKWAEEEEDSTYDIVIIIQDNGDPPKST
SVNITVTVDEKATANDAPISPHHTPFYHRTGMSDITLYLIISLACVSAVSFITFVILMVR
CLRHRGPGLGGVDCCCYDNHRSSRYHQRPSKDLHLQLNTDGPIRYMEVVGGPQDPHTRTY
RPCYSTISSRSDFVFMKTPMLSHNNTLNMTLSRKHLMNSASEQKPPNNDWRFTQGQRPGP
SGPHMPYGTHIRWTPKDGTRAAGGPEVAMGTGPWPQPPTEAEQLQALMAAANVSEATATL
GPGTMGLSTRYSPQFTLQHVPDYRQNVYIPGSTATLTSNPQQQQQQQQATAQQATQQALP
PPQASGQPEPPKAAQTPASKKKSTKKEKK
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggactccagacagaggaagcgctccagaggagggaggcagctgtcgaggctgtgcttt
tatctggcttgcctctcttgtgcgtccgctcagctcagttattccgtatcggaggaacta
agcccgggctctatcgttgggaatatcgcaaaagatttgactcttactatccagcggatt
gttcaaaggagattgcgggtggtctcggaatccaatacgcaatattttgaggtaaagcag
gcgaccggcgatttggttattaaacaaaaaattgacagagaacaattgtgcgaatcaagt
gcaacgtgttcattacaccttgagatacttctggaggatcctttagaaatccaacgcgtt
gtagtggacattttggatgtaaatgacaatgcaccgctgttttcaaccagcaacatttct
ttggaaatatcagaggcggctgtgccaggcacaaggttccgcttggagagcgcacacgac
ccagacgtgggtaccaactcattacgcacttaccatcttgcagcaaatgacttctttact
ctgaatgtggagactaaaagtgacggcagcaagtttccagagttagtggtggataaagct
ttggacagggagacgcaggcctcgtttcgcctgctgctcaccgctgtagatgggggtcag
ccggagaaatctggctccacactcatgctcattaaaattctggatgtaaatgacaatgtg
cccgtctttgacgagccagtgagaaaagttagcctgttagaaaatgttgcacttggcact
ttagtaacgaaactgaacgcgactgacgcggattcgggtcataacggagaaatatccttc
ctgtttagtaaatacacaccggaacgtgtactcaaacttttcagtgtggatcctaaaagt
ggggagatccgtgtgaagggtgatgtggattatgagaagggcaatgcttatcatatcaca
gtgcaggccagagatggtggctctcctgctatggagggctcatgtaacgttatagtggac
atcactgatgtgaatgacaacaaaccagaggtgacactgacaaaactgaccagccctatc
aaagaggattcaacaccagagactgtgatagcactaataagtgcacgcgacctggactct
ggtatgaatgggaaggttacattaagtgtccaacaaggtttaccattcaaacttaactca
gcttttggcatgcattacagcctcaccactgctggcaaactggaccgtgagactgttcca
gagtacacagtggtcatcaaggccactgatgctggttctcctcccttgtcatcacaaacc
acctttgtggtgaagatagctgatgtgaatgacaatgcccccatcttctctcagccttca
tactctgtagacatcccagagaacaatgctcccagtacccccatcaccactgttttagcc
actgacccagacctgggtgataatgctcgcatcacctactccatccttcccagcatggtg
cagggctcaaccatctcttcttatgtctacattaatccagagagtggccacatctacagc
atgcgctccctggatcatgaacagcttaatgctttccgtatcgaggtgcaggcccgggat
gccggggtgcctgtgctgacaaccaacatcactgtgcatgtgtttgtggtggacacgaat
gacaatgcaccagtgattgtacaccccgcctacccaaaagataaaggattacagctcact
gtgcccccatctgccggccccgggtacctcgtaaataaacttgtaggggtggatgcagac
agtgggcacaatgcatggttgttttactctattgcccctggaccaaatgctggcatgttc
cgtattggggcacacactggtgagctccgcacagcccgtaagtgggctgaggaggaggag
gactccacttatgacattgtgattatcatccaggacaatggtgacccaccaaagtccact
tctgtgaacattacagtaactgtggatgagaaggccacagctaatgatgctccaataagc
ccccaccacacacccttctaccaccgtactgggatgtcggacatcactttgtacctcatc
atctctctggcctgtgtatcggctgtgtcctttatcacctttgtcattctcatggtacgc
tgcctaaggcaccgtggccctggactgggtggcgttgactgctgctgctatgataatcac
aggtccagtcgctaccatcagaggcccagcaaggacctgcacctgcagctcaacactgat
ggacccatacgctatatggaggttgtgggaggcccccaggatccacacacacgcacttac
aggccgtgctactccaccatatccagccgcagtgactttgtatttatgaagacacccatg
ctgagtcataacaacacactcaacatgacactaagcaggaagcaccttatgaactcagcc
agtgagcaaaagcccccaaacaatgactggcgcttcacacagggacagagacccggacct
agcggaccccacatgccatacggtacacacatacgatggacgccgaaggatgggacaagg
gctgctggaggacctgaggttgccatgggaactggcccctggccccagcccccaactgaa
gcagagcagctccaggccctgatggctgcagctaacgtgagcgaggctacggccactttg
gggcccggcaccatgggcttgagcacccgctacagcccccagttcaccctgcagcacgtc
cccgactatcgccagaatgtgtacatccctggcagcacggccaccctcacctccaacccc
cagcagcagcagcagcagcagcaggccacagctcagcaggccacccagcaggcactgccc
ccaccccaggcctcaggccagcctgagccccccaaggccgctcagacccctgcctccaag
aagaagtccaccaagaaggaaaagaagtag
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