Scomber scombrus (Atlantic mackerel): 133987419
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Entry
133987419 CDS
T10651
Symbol
agrn
Name
(RefSeq) agrin
KO
K06254
agrin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04512
ECM-receptor interaction
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133987419 (agrn)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133987419 (agrn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssco00535
]
133987419 (agrn)
Proteoglycans [BR:
ssco00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
133987419 (agrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
EGF_laminin
SEA
Kazal_CFAI
EGF
Laminin_G_3
hEGF
FG-GAP_3
Motif
Other DBs
NCBI-GeneID:
133987419
NCBI-ProteinID:
XP_062282769
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All DBs
Position
10:complement(7682284..7844596)
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AA seq
1982 aa
AA seq
DB search
MVSSALEGRGSLEWTMSGCHYPSPTPPERDRRYQHKVSLVVRYFMIPCNICLILLATSTL
GFAVLLFLNNYKPPQFTVPQLPDGCKGMLCGFGAVCERDPTDQGKAECVCKRVDCPSLVA
PVCGSDSSTYSNECELEKAQCNTQRRIKVLRKGPCSLKDPCTEVTCSYGSTCVQSSDGLS
AKCMCPLGCEGKPEKTVCGSDGRDYRNECELHQHACKNQKNIRVQYQGHCDPCKDSDNSL
NTMCRVEALTRQPLVFGPPESCPPGNEQLCASDGVTYHSECAMTSTGIRKGIKLRKIHAG
PCRRLEECKEDCLFNAVCLVEQLTTRCSCDPIECDGTYKPVCGKDGKTHTNDCMRRKAEC
VSRTLIPIKHQGPCDLDTPSPCLDKRCDHGSVCVVKNDEPVCECPEACPQTSDPVCGSDG
HSYGSPCEMRAMGCALQKAIHIQHKGPCDETCANCSFGAICDAQSGQCVCASECVESHQP
VCGSDGFTYNSECELHVRACKEQMELRVVSQGECKTCGSTVCAWGARCVQNKCECPQCSG
EAFSPVCGSDGTTYDNECELHVSSCMQKRGIDVAKRGSCDEDCGSGGSGSGAESCEQDRC
RLFGGSWDEDAEDDRCVCEFTCQSVPHNPVCGSDEKTYSNECELKKARCEKQEHLLIRSQ
GHCAVISATSLPEQKAQQHCSLSVYGCCSDNMTAALGVGLAGCPSTCQCNVYGSYKGTCD
PATGQCSCKPGVGGQKCDRCEPGFWNFRGIVTENISGCTPCNCDATGSVRDDCEQMSGLC
SCKTGVKGMKCNVCPDGSKMGMNGCDKGPKAVTSCEEVECSFGASCIEENGQAHCECPSP
DCDEKNKTKVCGSDGVTYADQCQLRTIACRQDKDITVQHFGQCTETISEPAVRPTPNPSA
SYPSSAATITTTAPIHPNMVWAIPSPETVAPGDTTPSPTITHNHRHPIHTQPQPRSTVAA
AHTTSSSRSSPTPSAASSFEGSGSGEPSGDEPTEEEEEEEDMDEDNGSGVTESSGTPEPV
GPTVASTTVPTAEDRSSCDNMPFGCCPDGKTPASTPEGANCPPTMRFSGFLHLDQVEGQE
IIYTPEMEDPKSELFGETARSIESALNELFRKSEVHKDFMSVRVRNLAPSNSILAFVEAH
FKPDTRYAVEDIEEALLKQLKASKESSIAVKKPEDENIRFTNYGLSSIPFFTTTTTTTAS
ITTAAPTTTTTTRPPPTTPYITRRPPGTTRRPYRRTTTTSAPVATPLPVTTTAPPPVATT
IFHPRGKPHHKIQKPCDSHPCLHGGTCEEDGNEFSCKCPAGRGGSVCEKVIKYFIPSFGG
QSYLAFQTMSAYHTVRIAMEFRASETTGILLYNGQDGKKDFISLALVNSRVELRFNTGSG
TGTLVSKIQISQGRWHQLVVTRNRRNAMLSVDNESHIEGESPRGTDGLNLDTHLFIGGVT
EEMKQDVRERTGVATGLVGCIRLLDVNNRVLNLQETGGDSLYGSSVGECGNNPCQPNPCK
NGAACQVKEAEMFHCKCSKGFWGPTCADVHDPCDPNRCHPSSQCQALPEGGYKCECPMGR
EGRHCEKVAERRGAYMPLFNGDSYLELKGLHLYGHDLRQKVSMTVVLMANDSNGLIFYNG
QKSDGKGDFISLSLNEGILEFRYDLGKGPATIRSKEPIQLNVWNTINLERSNRKGEIMVN
KKDPVRGEAPNLHVDLNLKESLLIGGAPDYSRLARVAALTDGFKGTIQKIILMGTPILLE
VNALRSSNVAMFQEHLCSQEPCLNGGRCNPQLDTYECACLSGFSGGNCQNTIYEKSAGET
EAIAFDGRTFIEYHNAVTKSEKALLVNKFELSIRTEATHGLVLWSGKGVERSDYIALAIV
DGHVQMTYDLGSKPVVLRSSVRVDTNQWIRIKASRALRDGSLQVGNEAAVTGSSPLAATQ
LDTDGALWLGGLEELAVTRRLPKAYSTGFVGCVKDVVVDGVELHLVEDALNSPKILHCSA
AK
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atggtctcctccgcgctggagggaagggggtcattggagtggactatgagcgggtgccac
tatccctcgccaacgccgccagagcgggaccgcaggtatcagcacaaggtgtctctggtg
gtgcgctacttcatgatcccctgcaacatctgcctgatcctgctggccacgtcgacactg
gggtttgccgtgctcctgttcctcaacaactacaaacctcctcaattcacagtgccccag
cttcctgatggctgcaaagggatgctgtgtggcttcggcgccgtatgtgagcgagaccca
acagaccagggcaaggctgagtgcgtttgcaagagagtggattgtccatccttggtagca
cctgtttgcggctcggattcgtccacctactccaacgagtgcgagttggagaaggcacag
tgcaatacacagcgacgcatcaaggtgctgcgcaagggaccctgctctctgaaagacccc
tgcactgaggtgacctgcagctacggcagcacctgcgtccagtcgtcagatggcttgtcg
gccaaatgcatgtgccccctgggctgcgagggcaaaccggagaagacggtgtgcggcagc
gacgggagggactaccgcaacgagtgcgagcttcatcagcacgcctgcaagaaccagaag
aacatacgcgtgcaataccaaggacactgcgacccgtgtaaagacagcgataacagcctg
aataccatgtgccgggtcgaggccctcacccgccagcccctcgtcttcggcccaccagag
tcgtgccccccaggtaacgagcaactgtgtgccagcgacggcgtgacctaccacagcgag
tgcgccatgacatctacaggcatccgcaaaggcatcaaactcaggaagatccacgcagga
ccatgcagaaggctggaggagtgcaaggaagactgtctgttcaatgcggtgtgtctggtg
gagcagctgaccacccgctgctcctgcgaccccatcgagtgtgacggcacgtacaagccc
gtgtgcggcaaagacggcaaaacacacaccaacgactgtatgcgacgcaaggcagagtgt
gtgagcaggaccctcatccccatcaagcaccaagggccttgtgatctagacacaccgagc
ccctgcttggataagaggtgcgatcacgggtcggtgtgcgtggtgaagaacgacgagccg
gtgtgcgagtgccccgaggcgtgcccgcagacgtccgacccggtgtgcggatccgacggc
cacagttacggcagcccctgcgagatgagagcgatgggttgcgccctgcagaaagccatt
cacattcaacacaagggaccctgcgatgagacttgtgccaattgctcctttggtgcaatc
tgcgatgcccagagcgggcagtgtgtgtgtgcatcggagtgtgtggagtcccaccagccc
gtgtgtggcagcgatggctttacctacaacagcgagtgtgagctgcacgtacgggcctgc
aaagaacagatggaactccgagtggtcagccagggagagtgcaaaacatgcggcagcact
gtctgtgcctggggcgcccggtgtgtccagaataagtgcgagtgcccacagtgctccggt
gaggcgttctctccggtgtgtggaagtgacggcaccacctacgacaacgaatgcgagctc
cacgtgtcctcctgcatgcagaagaggggaattgatgtggcgaagcgcggcagctgtgat
gaagattgtggctcgggagggtcaggttcaggcgcggagagctgcgaacaggaccggtgt
cgcttgtttggaggctcgtgggacgaggacgcagaagatgaccgctgtgtgtgtgaattc
acctgtcaaagtgtgcctcacaacccagtttgtggctcagatgaaaaaacctacagcaac
gagtgcgagctgaagaaggccagatgtgagaaacaagagcacttgttgattcggagtcag
ggacactgtgcagtgatttcagccacatctctgcccgagcagaaagcgcaacagcactgc
agcctgtctgtgtacggctgctgctccgacaacatgacggcagccttgggagtcggactg
gctggatgtcccagtacctgtcagtgtaatgtctacggctcctacaaggggacgtgcgac
ccagccaccggtcagtgctcttgtaagccgggcgttgggggacagaagtgcgaccgctgc
gaaccgggcttctggaacttccgtggcattgtgacggagaacatcagcggctgcacacct
tgtaactgcgacgccacgggctccgtccgggacgactgtgaacagatgtcgggtctgtgc
tcctgcaagacgggagtgaagggcatgaagtgcaacgtgtgtccagatggaagcaagatg
ggcatgaatggctgcgacaaaggtccaaaggctgtgacctcatgtgaagaggtagagtgc
agttttggagcttcttgcattgaggagaatggccaagcccactgtgagtgtccttcacct
gactgcgatgagaaaaacaaaactaaggtgtgtggctcagatggggtgacctatgccgac
cagtgccagctgaggaccatagcctgcaggcaggacaaggacatcacagtgcaacacttt
ggacaatgcacagaaaccatctccgagccggcagtacgacccactcccaacccctccgcc
tcttaccccagctctgccgccaccatcaccaccactgcccccatccaccccaacatggtg
tgggccatcccgtctccggagacagtggcgccaggggacaccaccccctctcccaccatc
acccacaaccaccgccaccccatccacacccagcctcagccgcggtccaccgtcgccgca
gcccacaccacctcctcctctcgcagcagccccaccccctccgccgcctcctccttcgag
ggctcgggcagcggggagccaagcggagacgagccgaccgaggaggaggaggaggaggag
gacatggacgaggacaatggtagcggtgtcacagagtccagtgggacaccggagcctgtc
ggtcccacagtggcaagcaccaccgtacccacagctgaggataggtcttcctgtgacaac
atgccattcggctgctgccccgacggcaagacaccggccagcactccagagggcgccaac
tgtcccccaaccatgagattcagcggtttcctgcacttggaccaggtggagggacaggaa
attatctacacacctgagatggaggatcccaagtcggagctgtttggagagacggcccgc
agcatagagagcgctctcaatgagttgttcagaaagtcggaggtgcacaaagactttatg
agcgttcgtgtccgtaacctggcgcccagcaactccatcctggcctttgtggaggcccac
ttcaaaccagatacaagatacgcggtggaggacattgaagaagccctgctgaaacagctg
aaggcctccaaagagtccagcatcgccgtgaagaagccggaggacgagaatattcgcttc
accaattatggcctctcctccatccccttcttcaccaccaccaccaccaccacagcgtca
ataaccacagctgctcccaccactactaccaccaccaggcctccgccaaccaccccttac
atcacccgtcgcccgccgggcactacccgcaggccctacaggcgaaccaccaccacctcg
gcgccagttgccacaccgctgcccgtcaccacgaccgcaccgcctcccgtcgccaccacc
atcttccaccccaggggaaaacctcaccacaagatccagaagccctgtgactcccacccc
tgtctccacggggggacttgcgaggaggacggcaacgagttcagctgcaagtgccccgcc
ggacgtggaggctccgtgtgtgagaaggtgatcaagtacttcatcccatcgttcggtggc
caatcctacttggccttccaaaccatgagcgcctaccacacggtccgtatcgccatggag
ttcagagcgtctgagacgacgggcatcctgctctacaacggccaggacggaaagaaggac
ttcatctctctggctctggtcaacagcagggtggagctcaggttcaacacaggttcggga
accggcacattggtcagcaaaatccaaatcagccagggccgctggcatcagctggtggtc
actcgcaaccgacgcaacgccatgctcagcgtggacaacgagtcgcacattgagggcgag
agtccacgtggtacagacgggctcaacctggacacccacctgttcattggaggagtaacc
gaggaaatgaagcaggatgtaagggaaaggacgggggtggccacaggtctggtcggctgt
atccgcttacttgatgtcaacaaccgggtactcaacctgcaggagaccgggggcgacagt
ctgtacggcagcagcgtgggtgaatgcggcaacaacccctgccagccaaatccatgcaag
aacggcgcagcatgccaggtcaaggaggcagagatgttccactgcaagtgcagcaaagga
ttctggggtccaacttgtgctgacgtccacgatccatgcgaccccaacaggtgccatcca
tcctcccagtgccaggcgctgcccgagggaggctacaaatgcgagtgtccaatgggacgt
gaaggaaggcactgcgagaaagttgctgagagaagaggggcttacatgccactgttcaat
ggagactcatacctggagctgaaggggctgcatctctacggccatgatctgcgtcaaaag
gtcagcatgacagtggttctcatggccaacgactccaacggtttgatcttctacaacggc
caaaaatcagacggaaaaggagacttcatctctctgtccctcaacgaagggatcctggag
ttccgctacgacctgggcaagggacctgctaccatcaggagtaaggagcccatccagctg
aacgtgtggaacaccatcaacctggagcgctctaaccgcaaaggagagatcatggtgaac
aagaaggaccctgtgcgaggagaggcaccgaacctgcacgtagatcttaacctgaaagag
tctctccttattggtggagctcctgattacagccgactggcaagagtcgctgctctcaca
gatggcttcaagggaacaatccaaaagatcattctgatgggtacacccatcctcttggag
gtgaacgccctgcgctccagcaacgtggccatgttccaagaacacctgtgttcccaggag
ccctgccttaatggcgggcgctgcaacccccagctggacacctacgagtgtgcttgcttg
agcggtttctcagggggaaactgtcagaacaccatctacgagaagtctgccggggagacc
gaggccatcgcctttgacgggcggacgttcattgagtaccacaacgccgttacaaagagt
gagaaagctctgctggtgaacaaatttgagctgagtatccgcacggaggcaactcatggt
ctggtgctgtggagcgggaagggcgtggaacgctcagactacatcgctctggccatcgtg
gacggacacgtccagatgacgtacgacttgggctccaagcctgtggtgctgcgttcctcg
gtgcgtgtcgacaccaaccaatggatacgcatcaaagccagcagagcacttagagacggc
tctctacaggtcggcaatgaggcagcggtaacagggtcatcgcctctggcagcaacacag
ctggacacagacggagcgctctggttgggtggtctggaggagctggcggtgacccgtcgg
ttgcccaaggcctacagcaccggcttcgtcggctgcgtcaaggacgtggtcgtggacggc
gtggagctccacctggtggaagacgccttaaacagccccaaaatattacactgttccgcc
gcgaaataa
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