KEGG   Scomber scombrus (Atlantic mackerel): 133990931
Entry
133990931         CDS       T10651                                 
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
  KO
K05695  receptor-type tyrosine-protein phosphatase F [EC:3.1.3.48]
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04514  Cell adhesion molecules
ssco04520  Adherens junction
ssco04910  Insulin signaling pathway
Brite
Enzymes [BR:ssco01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.48  protein-tyrosine-phosphatase
     133990931
Protein phosphatases and associated proteins [BR:ssco01009]
 Protein tyrosine phosphatases (PTPs)
  Class I PTPs (Classical)
   Receptor PTPs
    133990931
Cell adhesion molecules [BR:ssco04515]
 Immunoglobulin superfamily
  Type II RPTP family
   133990931
SSDB
Motif
Pfam: Y_phosphatase fn3 I-set Ig_3 Ig_DSCAM-DSCAML_C Pur_ac_phosph_N Ig_2 ig fn3_2 Interfer-bind Fn3_VIN3 V-set PTP-SAK Tc-R-P DSPc C2-set_2 Y_phosphatase3 Fn3_PTPRU PTPlike_phytase PTP-NADK ICAM_N Insulin_TMD
Other DBs
NCBI-GeneID: 133990931
NCBI-ProteinID: XP_062285339
LinkDB
Position
11:20975060..21152806
AA seq 1899 aa
MVPNTHLAMPLLPRGALLFLLLLNCMGISSLADSLPSFVKSPEDQTGISGGVASFVCQAA
GEPKPRITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRTHRDEAIYECTATNSAGEIN
TSAKLTVLEENQIPHGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEISWFKDMLPVDI
SSSNGRIKQLRSGALQIENSEESDQGKYECVAMNSAGTRYSSPANLYVRVRRVPPRFSIP
PTNQEVMPGGSVNLTCVAVGSPMPYVKWMKGEVELTKEEEMPMGRNVLEVTNIRESANFT
CVAMSSLGMIQATAQVTVKALPKPPTSLIVTETTATSVTLTWDSGNPEPVSYYMIQYKAK
ASDNGFQEVEGVATTRYSIGGLSPYSEYEFRVMAVNNIGRGPPSDPVETRTGEQAPSSPP
LHVQARMLSASTMLVQWEQPEEPNGQIRGYRVYYSSDLTAPLSAWQKHNTDDSSLTTISG
LTPDITYSLRVLGFTSVGDGPPSDILQVKTQQGVPAQPSSFEAEAELDTRIVLTWLWPVQ
DPITKYELQYWENGSDNKLHVSFNPAGSYAVDGLKPDTLYHFSLAARSEMGLGVYTQPIE
VRTAQSTPSAPPQEVHLVSLSSTSLKVSWVAPPAASRHGAIVRYTVSYQALTGEDTERHE
VAGIGAEATSYVLEGLEKWTEYQVWVRAHTDVGPGPESAPVRMRTKEDVPGAPPRKLEVE
AVNSTAIRVTWKPPLQVKQHGQIRGYQVIFSRLENGEPRGQPNIMDVALPEAQEAIISGL
HSETTYSVTVAAYTTKGDGARSKAKVITTTGAVPGKPTMMISTTMGNTALIQWQPPKEMV
GELMGYQLQYKRTDDDAYISRELGKNEDHYTATGLHKGATYVFRLGARNRAGIGEAYVKE
INTPEDVPSGFPLNLQVTGLTQSSTQLTWEPPLLPERNGKIQYYVVVYRDINSQQNSTNR
TSDRHMTIQGLNPDTTYDIRVQAFTSKGGGPLSPSIQSRTMSNDFPTLNFGVKAVMKTSV
LLTWDLPPNYKPAVPFKILYNQQSVEVQGNLKRKLITQLQPDTDYSFVLTSRGNIAGGLQ
QQVSIRTAPDLIQTRPIYTTHQAQGGKMTINLPKVQTTTRVRWYYIVVVPVSQSTRRWKN
PDEMDLDELLKSSEGPVLRRRRHLDSSKPYIAAKLASLPTTFTLGDEKTYNGFYNKPLTS
QQEYLCFVLAVLRYEGTDGTANYMTFSASPYSDLIQVTTRLSQGMEQPEMLWVMGPVLAV
VLIIIIVIAILLFKKKRASPLPKDEHSGGVKDSLLANSSDPVEMRRLNYQTPGMREHPPI
PVIDLADHIERLKANDGLRFSQEYESIDPGQQFTWENSNMEVNKPKNRYANVIAYDHSRV
VLTSVDGKGSSVPGSDYINANYIDGYRKQNAYIATQGPLPETLSDFWRMVWEQRSSTIVM
MTRLEEKSRVKCDQYWPSRGTETYGMIQVTMLDTVELATYSVRTFALYKNGSSEKREVRQ
FQFMAWPDHGVPEYPTPILAFLRRVKACNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERM
KHEKSVDIYGHVTCMRAQRNYMVQTEDQYIFIHEALLEAATCGNTEVPARNLYAHIQKLT
QPPPGETVTAMELEFKRLANSKAHTSRFISANLPCNKFKNRLVNIMPFESTRVCLQPIRG
VEGSDYINASCIDGYRTQKAYLATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREK
CHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGV
PKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDLF
QTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT
NT seq 5700 nt   +upstreamnt  +downstreamnt
atggtgcctaatactcacctggcaatgcccctcttgcccagaggggcgttgctgttcctg
cttctactcaactgcatggggatctcctctctggcagacagcttgccaagttttgtcaaa
tccccagaggaccagacgggcatttcaggcggagttgcgtcgtttgtgtgccaggccgct
ggggagcccaaacccagaatcacctggatgaagaaaggcaagaaagtcagctctcaacgc
tttgaggtgattgagtttgatgatggttcgggctccgtactgcggatccagccactgcgc
acacacagagacgaagccatttatgagtgcacagccaccaacagtgctggcgagatcaac
accagtgccaagcttacagtgcttgaagagaaccagatcccccatggcttccccaccata
gacatgggtccccagctgaaggtggttgaacggaccagaactgccaccatgctgtgtgct
gccagtggaaatccagacccagagatctcctggttcaaggacatgcttcccgtggacatc
agcagcagcaacgggcgcattaaacagcttcgctcaggagccctgcaaattgagaacagc
gaggaatcagaccaggggaaatatgaatgtgttgccatgaacagtgctgggacccgttac
tcctctcctgccaatctctacgtacgagtgcgaagagtcccacccagattctccattcca
cccaccaaccaagaggtgatgccaggcggcagcgtcaacctgacatgtgtggcggtgggc
tcgcccatgccttacgtcaagtggatgaagggcgaggtggagctgacaaaggaagaagag
atgccaatgggacgcaacgtgctggaggtcaccaacatacgggagtcggccaacttcacc
tgcgtggccatgtcctccctgggcatgatccaagccactgcccaggtcactgtcaaagca
ttgccaaagccccctacctcgctcatagtgactgagaccacagcaaccagcgtgactctc
acctgggactctgggaacccagaacctgtctcctactacatgattcagtacaaagccaag
gcatcagacaatggcttccaggaagtggagggtgtggccaccacccgttacagcatcggt
ggacttagcccctactctgaatatgagtttcgtgtcatggctgtcaacaacattggccgc
gggccacctagtgaccctgtagagacacgcactggtgaacaggccccctcctcaccacct
ctgcacgtccaagcacgcatgctgagtgccagcacaatgctggtccagtgggagcaaccc
gaggaacctaacgggcaaatcaggggctaccgggtctactacagctcggacctaacggct
ccactcagcgcctggcagaagcacaacacagatgacagcagtctgaccaccatctcaggc
ctgactcctgatatcacctacagcctcagggtactgggttttacctcagtaggcgatggg
ccaccttctgacatcctgcaagtcaaaacccagcagggagtccctgcccagccgtccagc
tttgaagctgaagccgagttggacacccgcatcgtgctaacatggctgtggcccgtacag
gaccccatcactaagtatgagctgcagtactgggagaatggctcggacaacaagctccat
gtgtccttcaacccagcgggctcatatgctgtggatggtctgaagcctgacactctgtac
catttctcgctggcagcccgttctgagatgggtttaggcgtctacactcagcccatagaa
gttcgcactgcccagtccaccccatctgccccccctcaggaggtacatctggtcagcctc
agctccactagcctcaaggtgagttgggtggcaccgcccgccgctagtcgccacggcgcc
attgtgcgctacacagtcagctaccaggccttgactggagaggacacggagcgacatgag
gtggcgggcatcggtgcagaagctaccagctatgtgctggagggcctggagaagtggact
gagtatcaggtgtgggtgagggcacacactgacgtgggcccgggccctgagagtgcccca
gtgaggatgagaaccaaagaggatgtgccgggagcacctcccaggaagctggaggttgaa
gccgtaaactcaacagccattcgagtcacctggaagccgcctctgcaggtgaaacagcac
ggccaaatccgaggataccaggtcatcttctcccggctcgaaaacggtgaaccacgaggc
cagcctaacatcatggacgtggctttgccagaggcacaggaggccatcattagtggactg
cattctgaaaccacctactctgttactgtagcagcatacaccacaaaaggagatggagca
cgtagtaaagctaaagtcatcaccaccactggagcagtgccaggcaagcccactatgatg
atcagcaccactatgggcaacacagcgctgatccaatggcagccgccaaaggaaatggtt
ggtgagttgatgggctaccagctgcagtacaagcgcactgatgacgacgcctacatctca
cgtgagctggggaagaatgaagatcactacactgccactggattgcataaaggtgccacc
tacgtcttccgccttggtgctcgtaaccgagcaggcatcggtgaggcctatgtaaaagag
atcaacaccccagaagacgtgccctcaggcttccccttgaacctgcaagtcactggactg
acccaatccagcacccagctaacatgggagcccccactgctgcccgaaaggaacggcaag
atccaatactacgtggtggtgtacagagacatcaacagtcagcagaacagcaccaaccgc
acttctgacaggcacatgactatccagggccttaatcctgacaccacttatgacatccgg
gtgcaggcattcaccagcaagggtgggggacccctcagccccagcatccagagcaggacc
atgtcaaatgattttcccaccctaaactttggtgtcaaagctgtcatgaaaacatctgtc
ctcctcacctgggatttgcctccaaactacaaaccagcagtgcctttcaagatcttgtat
aaccagcaaagcgtggaggtgcaaggaaacctgaagaggaagctgatcacgcagctgcag
ccagacacagactactcttttgtgctgacaagcaggggtaacatagcaggaggtctgcag
cagcaggtgtccatccgaactgcccctgacctgatccaaaccaggcccatttacaccaca
catcaggctcagggtggcaaaatgaccatcaacctgccgaaggtccagaccaccacacgt
gtgaggtggtactacatcgtggtggtgccggtgtcccaatcaacgcgccggtggaagaat
ccagacgagatggacctggatgagctgctaaagtcaagtgaaggccctgtcctgaggcgt
cgacgtcaccttgactcctccaagccttacattgctgccaagttggcttcactgccgacc
accttcacccttggcgatgagaagacatacaacggcttctacaacaagcccctgaccagt
cagcaagagtatctctgctttgtcctggctgtactccgatatgaagggacagatggcact
gctaattatatgacattttcagcaagtccctactcagacctcatccaggtcaccacacgt
ttgtctcaggggatggagcaacccgaaatgttgtgggtcatgggcccagtgttggctgtg
gtcctcatcatcatcatcgtcatcgccatcctgctctttaagaagaaacgggcatcacct
ctacctaaggatgagcactcaggtggggtgaaagactccctgctggctaactcgtccgac
cctgtggagatgagaagactcaactaccaaaccccaggaatgagggagcacccgcccatt
cctgtcattgacctggctgaccacatagagcgactgaaagccaatgacggcctccgcttt
tcccaagagtatgagtccattgatccaggccagcagtttacctgggagaactccaacatg
gaagtcaacaagccaaagaatcgctatgcaaacgtcatcgcctacgaccactccagagta
gtccttacctctgttgatggtaagggctcatccgttcctggcagtgactacatcaacgcc
aactacatcgatggttacaggaagcagaatgcctacatcgccacacaggggcctctgccg
gagacattgagcgacttctggaggatggtatgggagcaaagatccagcaccatcgtcatg
atgaccagactggaggagaagtcacgggtgaagtgtgaccagtactggccgtcacgagga
acagagacctatgggatgatccaggtcaccatgctggacactgtggagttggccacttac
agcgtccgtacattcgccctgtacaagaatggctccagtgagaagagagaggtgcgccag
ttccagttcatggcctggccagaccacggggtgccagagtacccaacccccattttggct
ttcttaaggcgggtaaaggcctgcaatcctccagatgcaggacctatggtggttcactgc
agcgctggcgtgggcaggactggctgcttcattgtgatcgatgccatgctggaacgcatg
aagcatgaaaaatctgtagacatctacggacacgtgacgtgcatgcgcgcccagaggaat
tacatggtacagaccgaggaccagtacatcttcattcacgaggccctactggaggccgcc
acctgcggcaacaccgaggtgccggcacgcaacctgtacgcccacatccagaaactcacc
cagccaccgcctggcgagacagtcaccgccatggagctggagttcaagagactggccaac
tccaaagcccacacttcacgcttcatcagcgccaacttgccctgcaacaagttcaagaac
cgtctggtcaacatcatgccttttgagtccacccgcgtctgcctgcagcccatccgtggc
gtcgagggctccgactacatcaatgccagctgcatcgacggctacagaacacagaaggcc
tatctggccacacagggtccactggccgagactactgaggacttctggaggatgctgtgg
gagcacaactctaccatcgtcgtcatgctcaccaagctacgagagatgggacgggagaag
tgccatcagtactggccagcggagcgttcagccaggtaccagtactttgtggtggatcca
atggctgagtacaacatgccccagtacatcctccgagagttcaaagtcacagatgccagg
gatggccagtccagaacaatccgccaattccagttcactgactggccagagcaaggtgtg
ccaaaaactggagagggcttcattgattttattggacaagtgcacaaaaccaaggaacag
tttggacaggatggaccaatcactgtacactgcagtgccggtgtgggcaggacaggcgtc
ttcatcaccctcagcattgtgctggagaggatgaggtacgagggcgtggtcgacctcttc
cagactgtgaagacacttcgcacccagcggcctgccatggtgcagaccgaggaccagtac
cagttgtgctacagggcagcattggagtacctggggagctttgaccactatgcaacgtaa

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