Scomber scombrus (Atlantic mackerel): 133992177
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Entry
133992177 CDS
T10651
Symbol
cxcl12a
Name
(RefSeq) chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1)
KO
K10031
C-X-C motif chemokine 12
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04060
Cytokine-cytokine receptor interaction
ssco04672
Intestinal immune network for IgA production
ssco04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
133992177 (cxcl12a)
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
133992177 (cxcl12a)
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
133992177 (cxcl12a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
ssco04052
]
133992177 (cxcl12a)
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133992177 (cxcl12a)
Cytokines and neuropeptides [BR:
ssco04052
]
Cytokines
Chemokines
133992177 (cxcl12a)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Chemokines
133992177 (cxcl12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IL8
Motif
Other DBs
NCBI-GeneID:
133992177
NCBI-ProteinID:
XP_062286866
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All DBs
Position
12:13745911..13753119
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AA seq
98 aa
AA seq
DB search
MDVKLLAVVAALTVLTYAPPSKAKPLGMVERCSCRSTVNNLPRVHIRELKFIHTPNCPFQ
VIAKLKTNKEVCVNPDTPWLQRYLKNAIKKMKQYKPGN
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaagctgctggcagtcgtggctgcgcttactgtgttgacatatgcgcctcca
tcaaaagcgaagccccttggtatggtggagagatgctcctgccgttcaacagtcaataac
ctccctcgagtccacatccgagagctcaagttcatccatacgcccaactgccccttccaa
gtgattgccaagctgaagacaaacaaagaggtgtgcgtgaacccagataccccatggttg
cagaggtacttgaagaacgccattaagaagatgaagcaatacaaaccgggcaactaa
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