Scomber scombrus (Atlantic mackerel): 133993700
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Entry
133993700 CDS
T10651
Name
(RefSeq) platelet-derived growth factor receptor beta-like isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04010
MAPK signaling pathway
ssco04020
Calcium signaling pathway
ssco04510
Focal adhesion
ssco04540
Gap junction
ssco04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133993700
04020 Calcium signaling pathway
133993700
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133993700
04540 Gap junction
133993700
09142 Cell motility
04810 Regulation of actin cytoskeleton
133993700
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ssco01001
]
133993700
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ssco04090
]
133993700
Enzymes [BR:
ssco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
133993700
Protein kinases [BR:
ssco01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
133993700
CD molecules [BR:
ssco04090
]
Proteins
133993700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
V-set
VEGFR-1-like_Ig-like
VEGFR1-3_N_Ig-like
C2-set_2
Orf78
RIFIN
Motif
Other DBs
NCBI-GeneID:
133993700
NCBI-ProteinID:
XP_062288699
LinkDB
All DBs
Position
14:complement(29977700..30002143)
Genome browser
AA seq
1042 aa
AA seq
DB search
MMPPIRGRTGSLDLLHFLLGVLLVEGGVCLELLPSASEVLLNSNSNYTVVCSGWSQVTWR
FPQDFQVGGVSVESQGSSSALQLLNATWMNSGRYTCEEEFSDQSREVDIFIPGQGPEEWF
VPPGPGVVMKEGEEGTIPCVVSDPQLLVRLYEGRGRTLVTGATYEPGRGFTGRLNDTSYV
CEASRGAEETQSQVYYVYSIIVPQQMEVELTVSGRVLKQGEALTVNCTVSDTDMVFFTWN
FPRRQEIDPLTDFLPNRIRSFVNISSATLADSGVYVCSVQETMQGQTVEKNISVTVLDRG
YVYLRSGDTNVSSLLHHTVELSVEVDAHPPPTVLWTRHNTSVATETTSITTTHLRDSRYV
STVTLVRVQMDQTGSYTATVSNDDDIAEVVFYLEVKAPPRITSLSQLGSKSVLCVSEGAP
PPSVTWYTCHSSHRCHNMTGSWTSQSGASGGLSVQENITEVEDRGVTKVNSVLTLQSLSS
LSAVRCEAKNSAGRRVRDLRILSSSLLSQVVVLAAVLVLVVIAIIFLIILIVLWRKKPRY
EVRWKVIESVSPDGQQYTYIDPTSLPYNSTWEVPREHVVLGQVLGSGAFGRVVEATVSDL
LHSHSMTKVAVKMVKQNSGAVQSLMSELKVLVHLGPHLNVVNLLGACTRGGPVYLITEFC
RHGDLVNYLQRNKHTFLQSDTHTKSDADGGYMDMNKEENAQYVAMKELSYADIEPAVYET
PYKPSDQQEALSVLLSDSPLLSLNDLLSFSYQISQAMDFLSSRNCVHRDLAARNVLVCEG
KLVKVCDFGLARDLQKDQDYVARGNSFLPVKWMSPESIFQNIYSSQSDVWSYGVLLWEIF
SLGGSPYPDLPMTQEFYCALKRGYRMNRPEHAPHNIFDVMSQCWEEKPQDRPAFSSLVVS
IGNMLTDDYRKRFLQLTEDFLRGETPAVVVRSRAADIQLNAGSPAPQVEVHLSEAEPQEA
GPSHGTYIIPITDITIETSGDAALDAVSPQLSDSQDTPGAQEVTSSADRREDEEGEASCS
RDEDESRRDEDESRRDEDESSL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctccaatcagaggacggacaggaagtctggacctgctgcacttcctgttgggt
gtgctcctggttgaaggaggagtctgtctggagcttcttccttcagcgtctgaagttctt
ctgaactcaaactccaactacactgtggtgtgttcgggctggagtcaggtgacctggcgg
ttccctcaggacttccaggtgggcggggtcagtgtggagagccagggctccagcagcgcc
ctgcagctcctgaacgccacctggatgaactctgggagatacacctgtgaggaagagttc
tctgaccagagccgagaggtcgacatattcatacctggacaaggtccagaggaatggttc
gttccgcccggtccaggtgtggtgatgaaggagggggaggagggtaccatcccctgcgtg
gtgtccgacccgcagctcctcgtcaggctgtacgagggccgaggccgaacgctggttacc
ggggcaacgtacgagccgggccgcggcttcacgggtcgtctcaacgacacgtcgtacgtg
tgtgaagcgtcacgcggtgccgaagagactcagtcacaagtctactacgtctacagcatc
atagtgcctcagcagatggaggtggagctgacggtgtcgggtcgggtcttgaagcagggt
gaagctctgacagtaaactgcaccgtctcagatacagacatggtcttcttcacctggaac
ttcccccgcagacaggaaattgaccctctgacagacttcctgcccaatcgaatccgctcc
ttcgttaacatctcctcagcaacactggcagactctggtgtttatgtgtgttcggtacag
gaaacaatgcagggacagactgtggagaaaaatatcagtgttactgtactggatcggggt
tatgtgtacctgaggtcaggtgacactaacgtgtcgtctctcctgcatcacacggtggag
ctcagtgtggaggtggacgctcaccccccccccactgtcctctggaccagacacaacacg
tctgtcgccacggaaaccacctccatcaccaccacacacctgagagacagcaggtatgtg
agcacagtgacgctggttcgagtccagatggatcaaacaggaagttacacagcaaccgtt
tccaacgacgacgacattgcagaggtcgtcttctacctggaggtcaaagccccccccagg
atcacgtctctgtcacagctcggcagtaagtcggtgctgtgtgtcagtgagggagccccg
cccccatcggtcacctggtacacctgtcatagctcacacaggtgccataacatgacgggc
agctggacgagccaatcaggagcctctgggggtttgtctgtgcaggagaacatcactgag
gtggaggacagaggcgtcaccaaggtaaacagtgttctgactctgcagagtctcagttct
ctgtcagctgttcgctgtgaagccaaaaactctgcaggacgccgagtcagagacctgcgg
atactatcctcctctctcttgtctcaggtcgtagtcttggcagcagttctggttctggtt
gtcatcgcgattatcttcctcatcatcctcatcgtcctctggagaaaaaaacctcgttat
gaagttcgttggaaggtgatcgagtctgtgagtcccgatggtcaacagtacacttacatc
gaccccacgagccttccttacaactccacctgggaggtaccccgagaacacgtagtacta
ggtcaggtgttgggttcaggtgcttttggtcgtgttgtcgaggcgacggtctctgatctg
cttcactctcactcgatgactaaagttgctgtgaagatggtcaaacaaaacagtggtgca
gttcagtctctgatgtcagagttgaaggttttggttcatctcggtcctcatctgaatgtt
gtcaacctactgggagcgtgcactagaggaggtcctgtctatctgatcacagagttctgt
cgtcatggagacctggtgaactacctgcagcggaacaaacacaccttcctacagagtgac
acacacaccaagagcgatgctgacggaggttacatggacatgaataaagaggagaacgct
cagtacgtggccatgaaggagctcagctacgccgacatcgaacctgcggtgtacgagacg
ccgtacaaaccgtcagaccagcaggaggcgctgtctgtcctcctcagtgactctcctctc
ctcagcctcaacgacctcctcagcttctcctaccagatctctcaggccatggacttcctc
tcctccagaaattgcgtccacagggacttggcagcgaggaacgttctggtctgtgagggg
aagctggtgaaggtctgtgacttcggtttggcccgagacctgcagaaggaccaggactac
gtcgccaggggcaacagcttcctgccggtgaagtggatgtctcctgagagcatcttccag
aacatctacagctctcagagcgacgtctggtcctacggagtcctgctgtgggagatcttc
tctctcggtgggagcccgtaccctgacctccctatgacccaggagttttactgcgctctg
aagagaggataccgtatgaacagacccgaacacgctccacacaacatcttcgatgtgatg
tcacagtgctgggaggagaaacctcaggacagacctgctttctcctcattggtcgtctcc
atcggcaacatgctgacggacgactacaggaagcgcttcctgcagctgacggaggacttc
ctgcggggagagactccggctgttgtcgttcgatccagagctgcagacatccagctcaac
gcaggaagtcccgccccccaggtggaagttcacctgtcggaggcggagccacaggaggca
ggcccctcccacggcacttacatcatccccatcactgacatcaccatagaaaccagcggt
gatgctgcgctggacgcagtcagccctcagctgtcagactcccaggatactcctggagca
caggaagtgacatcatcagcagacagacgggaggatgaggagggtgaggcgtcatgcagc
cgtgatgaagatgagagccgccgtgatgaagatgagagccgccgtgatgaagatgagagc
agcctgtga
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integrated database retrieval system
