Scomber scombrus (Atlantic mackerel): 133996000
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Entry
133996000 CDS
T10651
Name
(RefSeq) H-2 class I histocompatibility antigen, K-D alpha chain-like
KO
K06751
MHC class I antigen
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04144
Endocytosis
ssco04145
Phagosome
ssco04218
Cellular senescence
ssco04514
Cell adhesion molecules
ssco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
133996000
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133996000
04145 Phagosome
133996000
09143 Cell growth and death
04218 Cellular senescence
133996000
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133996000
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
133996000
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ssco00537
]
133996000
Exosome [BR:
ssco04147
]
Exosomal proteins
Proteins found in most exosomes
133996000
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ssco00537
]
Antigens
133996000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MHC_I
C1-set
DUF4690
C2-set_3
DUF4342
SpoIIIAH
DUF4719
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
133996000
NCBI-ProteinID:
XP_062291502
LinkDB
All DBs
Position
16:3158425..3274554
Genome browser
AA seq
634 aa
AA seq
DB search
MYLFAVFVLLGTGLTVNSEIHSLKYIYTAFSKPVELPGIHEFTAMGQMDGRMIDYYDSDV
QKKVAKQEWMKDKLPEDYWEKGTQSRQSKQQWFKVNIDILKKRMNQTDDDLRVLQWMHGC
EGETGPDGTLKFVRGVDMYNYDGQDFLSFDDAHSVWVAAADIAVQTKRKWDEVQVLKEYT
KGYLENECIDWLSKFMTYGEKQLKAASKPDVHVLAKKTRIESNLMLSCLATGFYPKDIIL
IIRRNGRVLTREDGLISSGVRPNGDDTFQRRDSVEILKSDIASFTCEVIHKASSVFVKKD
WDHKVDGGNNIGIIVGGAIGGLLVVVLVAVVLVVLKKKGKFGSNQSPTSGRSSSSGSGQA
DPEEAVPLNKSPVVSVITVKGSKESVNSGDSGRSTGSVPNDEDVAKPLLDDEKKNTAPPD
VHVFAKNTRIETHLMLTCLATGFYPKDIILNIRRNGHILTKEDGLKSSGVRPNEDDTYQR
RDSVEIFKSDIYSFTCEVIHKASGVSVQKDWDHKVNGGNNIGIIAGVIVVLLAVVVLVAV
VLVVLKKKLIIGCAKPANGSKESLNSGKTSSSGSGGSEVPKNEGVAKPLLDDEEKDKGSK
ESLTSKDSGVSAGSDNSSSTSSSVSSQKENKKTT
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtatctcttcgcagttttcgtccttttggggacgggactgacagtaaacagcgagatt
cactccctcaagtacatctacaccgccttctccaaacctgtcgaacttccgggcatccat
gagttcacagctatgggtcagatggacggcaggatgatcgactactatgacagtgatgtc
cagaaaaaagttgccaagcaggaatggatgaaggataaacttcctgaagactactgggag
aaaggcacacagtcccgccaaagcaagcagcagtggttcaaagtcaacatcgacatcctg
aagaaacgaatgaatcagaccgatgatgatctccgtgttcttcagtggatgcacggctgt
gagggtgaaacagggcctgatggcacattaaagtttgtccgtggtgtggacatgtacaac
tatgatggacaagacttcctgtcctttgatgacgcccactcagtgtgggttgctgccgct
gatatagcagtccagaccaagagaaagtgggatgaagtccaggtcctaaaagaatacacc
aaaggctacctggagaacgagtgtatcgattggttgagcaaattcatgacatacggggaa
aaacagctgaaagctgcctctaagccagatgtgcacgtgctcgctaagaagaccagaatt
gagtcaaacctcatgttgagctgcctggccacaggtttctacccaaaagacatcatcctt
atcatcagaaggaacggccgcgttctgactagagaggacgggttgatctcctcaggcgtt
cgaccaaatggagacgacaccttccagagaagagacagtgtggagattttaaagagtgac
atcgcttcattcacatgtgaagtcattcacaaagcatccagtgtatttgttaagaaggat
tgggatcataaagttgatggaggaaataacatcggcattattgttggtggggcgattggg
ggcctgctcgttgttgtactcgtggctgtagtgctggtggtgttgaagaagaaagggaaa
tttggatccaatcaatctcctacaagcggtcgttccagctcttctggttctggtcaagca
gatccggaggaagctgttcccttaaacaaatctccggtagtgtccgtcatcactgtcaaa
gggtccaaggagtctgtgaacagcggtgattctggtcgctctactggatctgtccccaat
gatgaagatgtggccaaacctctcctggatgatgagaagaaaaatacagctccaccagat
gtgcacgtgtttgctaagaacaccagaattgagacacacctcatgttgacctgcctggcc
acaggtttctacccaaaagacatcatccttaacatcagaaggaacggccacattctgact
aaagaggacgggttgaagtcctcaggcgttcgaccaaatgaagacgacacctaccagaga
agagacagtgtggagatttttaagagtgacatttattcattcacatgtgaagtcattcac
aaagcatctggtgtatctgttcagaaggattgggatcataaagttaatggaggaaacaac
atcggcattattgctggggtgattgtagtcctgctcgccgttgtcgtactcgtagctgta
gtgctggtggtgttgaagaaaaaattgataattggatgtgctaaacccgccaatggatcc
aaagaatctctcaacagcggtaaaaccagctcttctggttctggtggttctgaagtcccc
aaaaatgaaggtgtggccaaacctctcctggatgatgaggagaaagacaaagggtcgaag
gagtctctgaccagcaaggactctggtgtatctgctggatctgacaacagctcatccacc
agctccagtgtctcttcccagaaagaaaataagaaaacaacctga
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