Scomber scombrus (Atlantic mackerel): 133996159
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Entry
133996159 CDS
T10651
Symbol
ext1c
Name
(RefSeq) exostosin-1c
KO
K02366
glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:
2.4.1.224
2.4.1.225
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco00534
Glycosaminoglycan biosynthesis - heparan sulfate / heparin
ssco01100
Metabolic pathways
Module
ssco_M00059
Glycosaminoglycan biosynthesis, heparan sulfate backbone
Brite
Enzymes [BR:
ssco01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.224 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
133996159 (ext1c)
2.4.1.225 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase
133996159 (ext1c)
Glycosyltransferases [BR:
ssco01003
]
Glycan extension
O-Glycan
133996159 (ext1c)
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Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_64
Exostosin_GT47
RXYLT1_C
Motif
Other DBs
NCBI-GeneID:
133996159
NCBI-ProteinID:
XP_062291708
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All DBs
Position
16:8629325..8709853
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AA seq
740 aa
AA seq
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MQARKKYVLLGLCACCWLVLFYWGGGVQLRLLRLLTRQRGEVVRPWPNWTDRAFLPRYAH
LDELQTDPGTSESPRQRRQAWSAIYKDSRCRMETCFDFSRCRRRGRDGFRVYIYPSEKND
HVSESYRKILQSIAESRYYTSDPREACLFVLGIDTLDRDQLSGQFVPNVDERIRGYPLWN
DGRNHLIFNLYSGTWPNYTEDLGLNIGQAILAKASLNTEHFRPGFDVSIPLFSKDHPQKG
GERGWLVRNTIPPRRKYLLMFKGKRYLTGIGSDTRNALHHIHNGKDIVSLTTCRHGKDWE
KHKDARCDHDNLEYERFDYQELLHNSTFCLVPRGRRLGSFRFLESLQAACIPVLLSNGWE
LPFSDVIQWNQAVIEGDERLLLQVPSTVRAVGNERVLALRQRTQMLWDAYFSSVDKIVLT
TLEIIKDRVFSHISRNKYMWNSQPGGLLVLPEFSTHLAHFPFYYLGLGVIPGQEFTAVIQ
AVSPLVSQSQPIMKLLQVVSKSKYCSQIIILWNSEKPPPNRSKWPPMPVPLTVTDGRRKT
TSRFLPHVAIETEAVLSLDEDTVLLTSEVNFAFLVWRSFPERIVGYPPRSHFWDPLKRAW
GYTSKWTNDYSIVLTGAAFYHRYYHYLFTHYLPQSLRTLVDRTSNCEDILMNFLVSAVTH
LPPIKVAQRKQYKELPSPQGTKSVPWANPEHFNQRQECVNAFANWFGYMPLVHSQFRLDP
VLFKDQVSVLRKKYKDLERA
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgcgtaagaagtatgttctgctgggcttgtgtgcgtgctgctggctggtcctc
ttttactggggcggaggagtccagctacgtctgctccggctgctgacacgccagcggggt
gaggtggtgcgcccctggcccaactggaccgaccgggccttcttgccccgctacgcccac
ctggatgagctccagacagaccctgggacgtctgagtcgccccgccagcgccgacaagca
tggtctgccatttataaggacagtcgctgccgtatggagacctgttttgatttctcccgg
tgccggcgtagaggacgggatgggttcagggtgtatatatatccatcggagaaaaatgat
cacgtgtcggaaagctacaggaagatcctgcagtctatagctgagtcacgttactacaca
tcagacccccgtgaagcgtgtctgtttgttcttgggatagacacccttgaccgggaccag
ctatcaggacagtttgtgcccaatgtggatgaacgtatccgtggttacccgctgtggaac
gacgggcggaaccacctgatcttcaacctgtactcaggcacctggcccaactacacggag
gacctgggcttaaacatcggccaggccatcttagccaaagccagcctcaacacagaacat
ttcaggcccggctttgacgtctccatccccctgttctcgaaggatcacccccagaagggt
ggagaacggggctggctagtgaggaacaccatccctccgcggaggaagtacctgctgatg
ttcaaagggaagcggtatctgacgggcatcggctcggacaccagaaacgcactccatcac
atccacaacgggaaggacattgtgtcgttgacgacgtgccgccacgggaaggactgggag
aagcacaaagatgcccgctgtgaccatgacaacctggagtatgagaggtttgactaccag
gagctgctccacaactctaccttttgtttggtgcctcgaggtcgacgtctgggttccttc
cgcttcctggagtccttacaggcggcgtgtattcccgtgttgctgagtaacggttgggag
ctgccgttctctgatgtcatacagtggaaccaggcggtcattgagggagatgagcgatta
ctgttgcaggtgccgtccacagtgagagcagtgggaaatgagcgagtcctggctctcaga
cagaggacccagatgttgtgggatgcctacttttcctctgtggataagatagtcctcacc
acgctggagatcattaaggaccgagtgttttctcacatatcgaggaacaagtacatgtgg
aactcccagcctggaggtctgctcgtcctaccagagttctccactcacctcgcacatttc
cctttctactacctgggattaggggtcattccaggtcaggagttcactgctgtcatccaa
gctgtctctccattggtctctcagtctcagccaatcatgaagctacttcaagtggtctcc
aagtcaaagtactgctcacagatcattattctgtggaacagcgagaagccgccaccaaat
cggagcaaatggccacccatgcctgtccccctcactgtgacagacggcaggaggaagacc
accagtcgcttcctacctcacgttgccatagagacagaagctgtactgagtctggacgag
gatacagtcctgctgaccagtgaggtgaactttgcctttttggtatggaggagcttccca
gagcggatcgtaggctaccctcccaggagccacttctgggatcccctgaagcgcgcctgg
ggctacacctcgaaatggaccaacgactactccatcgtcctgactggagctgccttctac
cacaggtactatcattacctgttcacccactacctgccccagtctttgcgaactctggtg
gatcgcacgtccaactgtgaggacatcctgatgaacttcctggtctctgctgtaacccac
ctgccgccaattaaagtggctcaaaggaagcagtacaaggagctgcccagccctcagggt
acaaagagcgtcccctgggccaacccggagcacttcaaccagcggcaggagtgtgtcaac
gccttcgccaactggtttggctacatgcctctggtccactctcagtttcgcctggacccc
gtgctcttcaaagatcaagtgtcggtgctccgcaagaagtacaaagacctggagagggca
tga
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