KEGG   Scomber scombrus (Atlantic mackerel): 133996187
Entry
133996187         CDS       T10651                                 
Symbol
tnfa
Name
(RefSeq) tumor necrosis factor a (TNF superfamily, member 2)
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04010  MAPK signaling pathway
ssco04060  Cytokine-cytokine receptor interaction
ssco04150  mTOR signaling pathway
ssco04210  Apoptosis
ssco04217  Necroptosis
ssco04350  TGF-beta signaling pathway
ssco04620  Toll-like receptor signaling pathway
ssco04621  NOD-like receptor signaling pathway
ssco04622  RIG-I-like receptor signaling pathway
ssco04625  C-type lectin receptor signaling pathway
ssco04920  Adipocytokine signaling pathway
ssco05132  Salmonella infection
ssco05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    133996187 (tnfa)
   04350 TGF-beta signaling pathway
    133996187 (tnfa)
   04150 mTOR signaling pathway
    133996187 (tnfa)
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    133996187 (tnfa)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    133996187 (tnfa)
   04217 Necroptosis
    133996187 (tnfa)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    133996187 (tnfa)
   04621 NOD-like receptor signaling pathway
    133996187 (tnfa)
   04622 RIG-I-like receptor signaling pathway
    133996187 (tnfa)
   04625 C-type lectin receptor signaling pathway
    133996187 (tnfa)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    133996187 (tnfa)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    133996187 (tnfa)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    133996187 (tnfa)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:ssco04052]
    133996187 (tnfa)
   00536 Glycosaminoglycan binding proteins [BR:ssco00536]
    133996187 (tnfa)
Cytokines and neuropeptides [BR:ssco04052]
 Cytokines
  Tumor necrosis fators
   133996187 (tnfa)
Glycosaminoglycan binding proteins [BR:ssco00536]
 Heparan sulfate / Heparin
  Cytokines
   133996187 (tnfa)
SSDB
Motif
Pfam: TNF Nucleoporin2
Other DBs
NCBI-GeneID: 133996187
NCBI-ProteinID: XP_062291749
LinkDB
Position
16:complement(28809366..28810944)
AA seq 246 aa
MKGEYKILLDAAVDTEARKQTTQSVEPSSKLTRVLLAFIFCLTAVAATAVLILNQHTKGS
RQIDEDNSDLHHTLRHLSKVRAAIHLEGEYNPDYNPDEKTAVEWKNQVDQSHSQGGLELE
NNEIVIPQDGLYFVYSQASFRVSCSSDDTNSQAMVHLSHSVKRSSHSYGNNDAKKSYKTI
MHSVRTACQKTFSSDTDGEGSWYSSVYIGAVFSLNKQDRLKTVTEEKILPNLEDEQGKTF
FGVFAL
NT seq 741 nt   +upstreamnt  +downstreamnt
atgaaaggtgaatacaagatattgctggatgctgctgttgacacagaagccaggaaacaa
acaacacagagtgttgagcccagctcaaagctaaccagagtcctgctagcgttcatattc
tgcctcactgctgtggctgctactgctgtcctcattctcaaccagcacaccaaggggtca
agacagatagatgaagacaattctgatcttcatcacacactaaggcatctttccaaagta
agagctgccattcatctagaaggtgaatacaaccctgactacaatcctgatgagaagact
gcagtggaatggaaaaaccaggtggatcagtcccactctcaaggagggctggaacttgaa
aacaacgagattgtgatccctcaagacggcctctactttgtgtacagccaggcatctttc
cgggtcagctgcagcagcgatgacaccaactcacaggccatggtccatctgagccactct
gtgaagcgctcgtcccactcgtatggaaataatgatgccaaaaagtcctacaagaccata
atgcactctgtccgcactgcctgccaaaagacattcagcagtgatacagatggagagggg
agctggtactcttccgtgtacataggagctgtgttcagcctgaacaaacaggacaggtta
aagacagtgacagaggagaagatcttgcccaatctagaggacgagcaagggaagacattc
tttggtgtgtttgccttgtaa

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