Scomber scombrus (Atlantic mackerel): 133997488
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Entry
133997488 CDS
T10651
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04115
p53 signaling pathway
ssco04145
Phagosome
ssco04148
Efferocytosis
ssco04350
TGF-beta signaling pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04820
Cytoskeleton in muscle cells
Brite
Membrane trafficking [BR:
ssco04131
]
Endocytosis
Phagocytosis
Opsonins
133997488 (thbs1b)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133997488 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133997488
NCBI-ProteinID:
XP_062293070
LinkDB
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Position
17:complement(20996314..21008807)
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AA seq
1169 aa
AA seq
DB search
MKLTGIFLLLMLWSCDGARVAESRDDNSVYDLFELVQVPKKNHGVSLVKGDDPYSPAYKI
LNPDLIPPVPERAFRDLIDSIHAEKGFLLLLNFKQFKRTRGSLLTVERKDGSGPVFEIVS
NGKANTLDIVFSTENKQLVVSIEDVDLATSHWKNITLFVQEDRAVLYTGCEEVDTAELDA
PIQSILTQETPATAQLRVGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSSMTADTM
ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVTMFKELKGLGVVVKELSNELRQLTD
ENKLIKHHIGIHSGACIHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGSWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQLGGKECEGEGRQT
EKCQKSPCPINGNWGPWSPWDTCSLTCGGGSQTRKRLCNDPAPKYGGKDCVGDAKDTQTC
NKKTCPIDGCLSNPCFAGAKCISAPDGSWKCGKCPVGYTGNGIKCKDIDECKEVPDACFE
FNGVHRCENTEPGYNCLPCPARYSGPQPFGKGLEQAAAKKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNSDLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDSDDDNDSIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQKDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDEKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISQTDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSLYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacagggatatttttgctattgatgctttggagctgcgatggtgcgagagtc
gcagagagccgagacgacaatagcgtgtatgacttgtttgagctcgtccaagtccccaag
aagaaccacggcgtctccctggtgaaaggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctgatccccccagtccccgagagggccttcagggacctgatcgattcc
atccatgccgagaagggattccttctcctgcttaacttcaagcagttcaaacgcaccagg
ggaagcctcctgaccgtggagaggaaggacggctccggtcccgtgtttgagatcgtctcc
aacggaaaggcgaacactttggacatagttttctccacggagaacaagcagctggtggtt
tccattgaagatgtggatctggctacgagccactggaagaatatcacgttgttcgtgcag
gaggaccgggcggtgctatacacgggatgcgaggaggtggacaccgcagagctggatgcg
cccatccagagcatcctgacgcaagagacccctgccaccgcgcagctcagggttgggaag
ggagccgtgaaggacagatttatgggggtcctacaaaatgtgcggtttgtgtttggaaca
acgctggatgccatactccgcaacaaaggatgccaaagctcaatgacagctgacaccatg
atcctggagaatctcaatggctcctcagccatcagaacagagtacaccggacataagact
aaagacctgcagatggtctgtggcttctcctgtgaggacctggtcaccatgtttaaggag
ctgaagggtctcggtgtggtggtcaaggagctgtccaatgaactccgccagctgacggat
gaaaacaagctgattaagcaccacatcggtattcatagtggcgcctgcattcacaatggc
attgtgcacaaaaacagagatgagtggactgttgatgactgcaccgagtgcacttgtcag
aactctgctactgtgtgccgcaagatctcttgccccctgatcccctgtgctaatgctacc
gttcctgatggagaatgctgcccgcgctgtggaacaccgagcgactatgcagaggacggc
tggtccccgtggtctgaatggacccattgttccgtgtcatgtgggcggggcatccagcag
cgtggacgctcttgcgaccgtatcaataacaactgcgagggtacctctgtgcagacccgc
gactgctaccttcaggagtgtgacaagcgcttcaagcaggatggcagctggagccattgg
tcaccctggtcatcatgctctgtcacttgtggtgagggtgtcatcacccgtatccgcctc
tgcaactccccaacccctcagcttgggggcaaagagtgtgaaggagagggccgacaaacc
gagaagtgtcagaagtctccgtgccccatcaatggcaactggggaccctggtcaccgtgg
gatacctgctctcttacatgtggaggcggttcccagactcgtaaacgattgtgcaatgac
ccagcaccaaaatacggtggcaaagattgcgttggtgacgccaaagatacccagacatgc
aacaagaaaacctgtcccattgatgggtgcctatccaacccctgctttgctggtgccaag
tgcatcagtgcccctgatggttcctggaagtgtggaaagtgcccagttggctacaccggc
aacggtatcaagtgtaaagatattgatgagtgcaaggaggtcccagatgcttgctttgag
tttaatggtgtgcaccgctgtgagaacacagagcctggctacaactgccttccatgtcct
gctcgctactctggaccccagccgtttggaaaaggattggagcaggctgctgctaagaaa
caggtgtgcacaccccgtaatccctgcctcgacggaagccacgactgcaacaaaaacgcc
cgctgtaactacctcggacacttcgctgatcccatgtaccgctgtgagtgcaaacccggc
tatgctggcaatggccatatctgtggagaggacacagatctggatggatggcccaactca
gacttggtttgtgtggagaatgccacctaccactgcaaaaaggacaattgccccaacctg
cctaactctgggcaggaagattatgataaggacggcattggagatgcttgtgacagtgat
gatgacaatgatagcattcctgatgatagggacaactgtccattcgtctacaaccccagg
cagtacgattatgaccgtgatgatgtgggtgaccgctgtgacaactgcccctataacagt
aacccagaccagacagacacagataacaatggagagggagatgcctgtgctgtggacatc
gatggagatggcatactaaatgagaaggacaactgtccctacgtgtacaatgtcgaccag
aaagacacagatctagatggggtcggagacatgtgcgataactgccctctggaacataat
cctgatcaggtggattcagatgatgaccgtgtgggagacaagtgtgacagcaatcaggac
attgatgaggacggacaccagaacaatctggacaactgcccatacatccctaacgccaac
caggctgaccatgacaaggatggcaagggagacgcctgcgaccatgatgatgataatgat
ggcatccccgatgaaaaggacaactgcagactggccttcaaccccgaccagctggactct
gatggtgatggccgtggagatgcttgcaaagatgactttgaccaagacaatgtgcctgac
atctacgacgtatgtccagagaactttgacattagtcagacagacttccgcaagttccag
atggttcctttggatcccaaaggcacctcccaaatcgatcctaactgggttgtccgccat
cagggcaaagaattggttcagactgtcaactgcgaccctggtatcgctgttggctaccat
gagttcaattcagtggacttcagtgggactttcttcatcaacaccgagagggatgatgat
tatgccggcttcgtgtttggttaccagtctagttccaggttctatgtggtgatgtggaag
cagatcacacagacctactggtcaaataaacccaccaaagcccagggctactctggtctg
tccatcaaagtggtcaactccactactggcccaggagagcacctcaggaatgccctctgg
cacacaggaaatacaccaggacaggtccgcactctctggcacgaccctaagaatgttgga
tggaaagatttcactgcctacagatggcatctgatccacagaccaagaacaggacatatt
agagttgtgatgtacgaaggcaagaagatcatggcagattctggtagcctctatgacaag
acatatgcaggtggcaggctaggtctttttgtcttctcacaggagatggtatacttctca
gacctgaagtatgaatgcagagatgcataa
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