Scomber scombrus (Atlantic mackerel): 134000214
Help
Entry
134000214 CDS
T10651
Symbol
scn4ab
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 4 subunit alpha B
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
134000214 (scn4ab)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
134000214 (scn4ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
134000214
NCBI-ProteinID:
XP_062295537
LinkDB
All DBs
Position
18:complement(216139..237910)
Genome browser
AA seq
1747 aa
AA seq
DB search
MAPLLPPLGTEIFRRFTPASLEEIQRRYEAEEEEQQRKKEKNIEDDLPKPASDLEAGKPI
PFIYGDPPPDLLNTPLEELDPFYQSQKTFIVLSKGNTIFRFNADPACYLLSPFSRLRIFS
IRILIHSLFSYFIMLTILTNCVFMTMSDPPAWSKTVEYVFTGIYTLEASVKVMSRGFCVG
DFTFLRDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALI
QSVKKMADVMILTVFCLSVFALIGLQLFMGNLRQKCVLMSPLLLGNHTYPGNLTTGYLGN
HTTPSNFTTSYLGNYTYGNDTGSNFDFQEYIKNPENHYYLPGANDALLCGNSSDAGVCPE
GYICMKVGRNPNYGYTSYDTFGWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVVI
FLGSFYLINLILAVVAMAYADQNEASIADAKRKEEEYAQILEALKKREEVSXLSKPHHCV
SGFDDDQRPCPPCWYAFSDVFLKWNCCGCWRWLKPWLYTIVMDPFIDLSITICIVLNTVF
MAMEHYPMTPQFEELLSVGNLVFTGIFTAEMVLKLLAMDPYYYFQVGWNIFDSIIVTMSL
VELGLANVQGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIF
AVVGMQLFGKNYKDCVCRIAEDCELPRWHMHDFFHAFLIIFRVLCGEWIETMWDCMEVAG
QTMCLMVFMLVMVIGNLVVLNLFLALLLSSFSGENLSAPDEDGENNLQIAINRINRAVAW
VTTWVLEQVWTLLGKKDLDQSAAGGDEDDRKEFLALSFVTSDQPGSEVNFLNCNHDEQPS
NYNNIATLKVPIAEAESDFEDDDDNDEDEEHHSQCDESSLCSTVQRIPEVQEEDHDEDQD
NNIPVDCYTEECYRCCPRLDIDTSQGRGKVWSNFRRTCYSIVEHNYFESFIIFMILLSSG
ALAFEDVYLEQRRVIKTLLEFADQVFTYVFVIEMILKWVAYGFKTYFTNAWCWLDFLIVD
VSLVSLTANLLGFSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLV
CLIFWLIFSIMGVNLFAGKFYYCFNETAGESFHHEDVDNKTECLALIQMNFTEVRWKNTK
VNYDNVGMGYLSLLQVATFKGWMDIMYAAVDSREVESQPIYEDNLYMYLYFVCFIIFGSF
FTLNLFIGVIIDNFNQQKAKLGGTDIFMTEEQKKYYNAMKKLGSKKPQKPVPRPENKFQA
LVFDLVTQQPFDIFIMVLICLNMVTMMVETDEQSPEKDQILYWVNLVFIIFFTTECTLKI
TALRHYYFAVGWNIFDFVVVILSVVGLLLADIIEKYFVSPTLFRVIRLARIGRVLRLIRG
AKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVRKGAMIDDMFNFETFGN
SMICMFMITTSAGWDGLLVPIMNTPPDCDPNAEHPGTLVRGDCGSPGLGIVFFTTYIIMS
FLVVVNMYIAIILENFNVATEESSDPLCEDDFEMFYEIWEKFDPDASQFIQYNKLSDFCD
TLQDPLRIPKPNTIKLIHMDLPLVPGDKIHCLDILLALTAQVLGDSGGMDALKASMEEKF
MANNPSKVSYQPISSTLRRKQEEVAARVIQRAYRKHLLQRTLKLASYKYREKTQGRRGDE
PPPETEGLLCQRIHQLYGDGDELRTPVSSGPAPAARVELQSEFLLHAAPPLNMRDFLRDE
NLRESIV
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctctgctgccccctcttggtacggagatcttcagacgcttcacgccagcttca
ctggaagagatccaaagacgatatgaagccgaggaggaggagcaacagaggaagaaggag
aagaacatagaggatgacctgcctaaaccagccagtgacctggaggctggtaagcccatc
ccattcatctacggggacccgcctcctgacctactcaacaccccattggaggagctggat
cccttctaccaatcacagaagaccttcatcgtgctcagtaagggaaacaccatcttcagg
tttaacgccgaccccgcctgttacctgctgagtccgtttagccgtctgaggatcttctcc
atcaggatcctcatccactctttattcagttatttcatcatgttgacgattctgaccaac
tgtgtgttcatgacgatgagcgaccctccagcatggagcaagactgtggaatacgtgttt
acaggaatttacacgttggaagcttcagtgaaagtcatgtcgagaggattctgtgtggga
gacttcaccttcctcagagacccctggaactggcttgacttcatggtcatcagcatggca
tatctgacagagttcgtagatttgggaaatgtttctgctttgaggacgttcagagttctt
cgtgcactaaaaaccatcacagtcatcccaggtttgaagacgattgtcggagctcttatc
caatcagtgaagaagatggctgatgtcatgatcctgaccgtcttctgcctcagcgtcttc
gctctgattggtctgcagctcttcatgggaaacttgaggcaaaaatgtgtcctgatgtcg
ccactgttgctcggcaaccacacatatcccggcaacctcactactggttacctcggcaac
cacacgactcccagcaacttcaccactagttaccttggcaactacacctacggcaacgac
acaggaagcaattttgatttccaagagtacatcaaaaatcccgaaaaccattattatctc
cccggagcgaatgatgctctgctatgtggaaacagctccgacgcaggggtctgtccggag
ggttacatctgtatgaaagttggcaggaatccaaactacggctacacgagctacgatacg
ttcggctgggcgtttctggctctgttcagactgatgacccaggactactgggagaacctg
ttccagctgactctgcgtgcggcaggtaaaacctacatgatcttcttcgtggtggtgatc
ttcctcggctcgttctacctcattaacctgatcctggcggtggttgccatggcgtacgcc
gatcagaacgaggcaagcatcgccgatgccaaacggaaggaggaagagtacgcccaaatc
ctggaggccctgaagaagagggaggaggtcagctgactgtccaaaccacatcactgtgtt
tcagggtttgatgacgaccagagaccgtgtcctccatgttggtacgccttctctgacgtc
ttcctgaagtggaactgctgtggctgttggcggtggctcaagccgtggctctacaccatc
gtcatggacccgttcatcgacctcagcatcaccatctgtatcgtgctgaacaccgtgttc
atggccatggagcattaccccatgacgccgcagtttgaggagctgctgagtgtcgggaac
ctggtgttcacagggatcttcacggctgagatggttctcaaacttctggccatggacccg
tactactatttccaggtgggctggaacatctttgacagcatcatcgtcaccatgagtctg
gtggagctgggattggctaacgtccagggcctgtcggtgctgcgctccttccgattgatg
cgagtgtttaagctggctaagtcgtggccgactctaaacatgctgataaagatcattggt
aactcggtgggggctctggggaacctgacgctggtcctggccatcatcgtcttcatcttc
gccgtggtcggcatgcagctgtttgggaagaactacaaagactgcgtgtgccgcatcgct
gaggactgcgagctgccccgctggcacatgcacgacttcttccacgccttcctcatcatc
ttcagggtcctctgcggcgagtggatcgagaccatgtgggactgcatggaagtggcgggt
cagaccatgtgcctgatggtcttcatgttggtcatggtcatcgggaacctggtggtcctg
aacctgttcctggctctgctgctcagctccttcagcggtgagaatctgtcggctccagac
gaagacggagagaacaacctgcagatcgccataaaccggatcaacagggccgttgcctgg
gtgacgacctgggtcctggaacaggtctggactctgctggggaagaaggacctggaccag
agcgcggccggcggcgacgaggacgacagaaaggagttcttggctttgtcctttgtgacc
tcggaccagccggggtcagaggtcaactttctcaactgtaaccatgacgagcagcctagc
aactacaacaacatcgccaccctgaaggttccgatcgccgaggccgagtcagactttgag
gatgatgatgataatgatgaagatgaagaacatcactcccaatgtgacgagtcgtcgctc
tgcagcacggtccagaggatccctgaagtccaggaggaagaccacgatgaagatcaggat
aacaacatacctgtggactgctacactgaagagtgttaccgttgctgtcctcgcctggac
atagacacgtcccagggccgagggaaggtctggtctaacttcaggagaacgtgttactcc
atcgttgaacacaactactttgagtctttcatcatcttcatgatcctgctgagcagcggc
gctctggcgtttgaagacgtctacctggagcagcgtcgggtcataaagacgctgctggag
tttgcagaccaggtgttcacctacgtgttcgtaatcgagatgattctcaagtgggtcgcc
tacggattcaagacctacttcaccaacgcctggtgctggcttgacttcctcatcgtagac
gtgtctctggtgtctctgaccgccaacctgctgggattctctgagctgggagccatcaag
tctctgaggacactgagagctctgaggcccctgagggccctgtctcgctttgagggcatg
agggtggtggtgaacgcgctggtcggagcgatcccgtccatctttaacgtgctgctggtg
tgtttgatcttctggctgatcttcagcatcatgggcgtcaacctgtttgcaggaaagttt
tattactgctttaacgagacggccggcgagtcttttcaccacgaagacgtcgacaacaag
accgaatgtttggctctgattcagatgaacttcactgaagtccgctggaagaacacgaag
gttaactacgacaacgtggggatgggctacctgtcgctgctgcaggtggcgacatttaaa
ggttggatggacatcatgtacgcggccgtcgactccagagaggtggagtcccagcctatc
tacgaagacaacctgtacatgtatctgtacttcgtctgtttcatcatcttcggctctttc
ttcaccctcaacctcttcatcggagtcatcatcgacaacttcaaccagcagaaagcaaag
ttggggggaacagatatcttcatgacggaggagcagaagaaatattacaacgctatgaag
aaactcggctccaagaaacctcagaaaccggttccacgccccgagaacaagttccaggcg
ttggtgtttgacctggtgacccagcagccgtttgacatcttcatcatggtgctgatctgt
ctcaacatggtgacgatgatggtggagacggacgagcaaagtccagagaaagaccagatc
ctgtactgggtcaacctggtcttcatcatcttcttcaccaccgagtgcacgctcaagatc
accgcgctaagacattactacttcgccgtcggctggaacatcttcgacttcgtggtggtt
attttgtccgtcgtaggtctcctcctcgctgacatcatagagaagtattttgtctcgccc
acgctcttccgtgtgatccgattggctcgcatcggtcgggtccttcgtctcattcgtggg
gcaaagggaatccggacgctgctcttcgccctgatgatgtcacttcctgccctcttcaac
atcggcctcctcctcttcctcatcatgttcatcttctccatcttcggcatgtcgaacttc
gcctacgtgaggaagggcgccatgatagacgacatgtttaacttcgagacgtttgggaac
agcatgatctgcatgttcatgatcacgacgtcggcgggttgggacggcctgctggttccc
atcatgaacacgcctccggactgcgaccccaacgcggagcatccgggtacgctggtcaga
ggagactgcggcagcccggggctcggcatcgtcttcttcaccacctacatcatcatgtcc
ttcctggtggtggtaaacatgtacatcgccatcatcctggagaacttcaacgtggccaca
gaggagagcagcgacccgctgtgcgaggatgacttcgagatgttttatgagatctgggag
aagttcgaccccgacgcgtcgcagttcatccagtacaataaactttcagatttctgcgac
acactgcaggatcctctgaggatccccaaacccaacaccatcaaactgatccacatggat
ctgcctctggttcctggagacaagatccactgtctggacatcctgctggcgctcactgca
caggtgctgggtgattcaggagggatggacgctctcaaagccagcatggaggagaagttc
atggccaacaatccctcaaaggtgtcgtatcaaccaatcagcagcaccctgcggaggaaa
caggaagaggtggcagcgagggtgatccagagagcgtacaggaagcacctgctgcagcgg
acgctcaaactggcgtcctacaaataccgcgagaagacgcagggacggcgaggcgatgaa
ccgcctccagagacagaaggtctcctctgtcaacgaatccatcagctgtacggagacgga
gacgagttgaggacacctgtctcatctggtccagctcctgctgcacgggtggagcttcag
agtgagtttctcctccacgctgcgccgccactcaacatgcgtgacttccttcgagatgag
aacctgagggagtctatcgtctga
DBGET
integrated database retrieval system
