Scomber scombrus (Atlantic mackerel): 134000307
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Entry
134000307 CDS
T10651
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134000307 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
134000307 (eftud2)
Spliceosome [BR:
ssco03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134000307 (eftud2)
Complex C
U5 SnRNP specific factors
134000307 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
134000307
NCBI-ProteinID:
XP_062295661
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All DBs
Position
18:complement(7849624..7863665)
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AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDLEAEDRDVDEGDDDDDDEPADADDDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKNKQFTLMEQELPATVYDMEFLAD
LMDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSIRISDGIVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIGELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYHICFTLGSFAKIYSDTYGDINYNEFSKRLWGDIYFNPKTRKFSKKPP
SNNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLSKEELKLNIRPLLRLVCN
RFFGEFTGLVDMCVQHIASPQEGARNKIEHTYAGGLDSDLGEAMAECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWINVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatctgtatgatgagttcggaaactacatcggtccagagctggactctgac
gatgatgaagatgatctggaggcagaggacagagatgttgatgagggtgatgatgatgat
gacgatgagcctgcagacgctgatgacgacgtccccggcatggaagtggtcctgcacgag
gataagaagtactatccgacagcagaagaggtttacgggccggaagtggaaactatcgtc
caggaggaagacacacagcctcttacagagcccatcatcaagcctgtgaagaacaagcag
ttcaccctgatggagcaggagctgcctgccactgtttatgatatggaattcctcgcagat
ttgatggacagtccggagctgattcgtaacgtcaccttgtgtggtcatctccaccatggc
aagacctgtttcgtggactgcctgatcgaacagacacatccagaaatcaggaagagagat
gatgtggatctccggtacacagacatcctctttacagaacaggagagaggagttggtatc
aagagtacccctgtcacaatggtcctgccagactccagaggcaaatcctacctattcaac
atcatggacacaccaggtcacgtgaacttctctgatgaggtcacatctagcatccggatc
tcagacggcatcgtcctcttcatagacgctgcggagggagtgatgctgaacacagagcgt
ttgatcaaacatgcagtccaggagcgtatggccatcaccatctgcatcaacaaggtggat
cggctcattggggagctcaaactgccgcccacagacgcttattataaactgcgccacatt
gtggatgaggtcaacggtttgctcagtacgtactccacagatgagaacttggtggtttct
cctctcctgggaaacgtgtgctttgccagctctcagtaccacatctgtttcacactggga
tccttcgcaaaaatctactcggacacttatggtgacataaactacaacgagttttcaaag
agactttggggagacatttatttcaaccccaaaactcgcaagttttcaaagaaacccccc
agcaataactctcagcgtagctttgtggagttcgtcctagagcctctctacaagatcctt
tcacaggttgtcggtgatgtggacacgtctctcccacgagttctggatgagctcggtatt
cacctgtccaaagaggaactgaagctgaacattagacccttgctgaggctggtctgtaac
cgcttctttggggagttcacaggccttgtggacatgtgtgtacagcatatcgcctcacca
caagagggtgctcggaacaagatagagcacacctacgctggaggtctggactcagacctt
ggggaggccatggcagagtgtgaccccgatggtcctttgatgtgccacaccactaagatg
tacagcacagaggatggggttcagttccatgcctttggcagggtgctaagcgggaccatt
caggcaggccagcctgtcaaggttttaggagagaactacaccctcgaagatgaggaggac
tctcaggtctgcactgtgggtcgtctctggattaatgtcgccagataccaaattgaagtg
aatcgagtgcctgctgggaactgggttctcattgaaggttgtgaccagccgatcgtgaag
accgccaccatcactgagcccagagggaacgaagaggctcagattttcaggccattgaag
ttcaacacggcatcagtaatcaagattgctgtggagcccgtcaacccgtcagagctgcct
aaaatgttggacggactgaggaaggtcaacaagagctatccttctctcaccacaaaggtg
gaggagtctggagagcacgttatcttaggcacaggagagctctacctggactgtgtcatg
cacgacctgcgcaagatgtactctgagattgatattaaagtcgctgacccagttgtgact
ttctgtgaaacggttgtggagacgtcgtccctcaagtgctttgctgaaacgcccaacaaa
aagaataagatcaccatgattgcagaacccctggagaagggactggctgaggacatcgag
aacgaagtggtgcagatcacgtggaacaggaagaagctgggagagtttttccagacaaag
tacgactgggatctgctggctgccagatctatctgggcctttggaccggacacaacgggg
ccaaacattctcgttgatgatactctgccttctgaggtggacaaggcgctgctcggctcg
gtcaaagacagcatcgttcagggcttccagtggggcaccagggaggggcctttgtgtgac
gagcccatcaggaatgtaaagtttaagatcctggatgcagtcatcgctcaggagcccctg
cacagaggaggaggccaggtcatccctacagccagaagagtggtgtactccgctttcctc
atggcgactccgaggttgatggagccttattactttgtggaggttcaggctccagctgat
tgcgtgtctgctgtctacacagtgctggctagaagaaggggccacgtcactcaggatgca
cctattccagggtctcctctctacaccattaaggctttcatcccagccatcgactccttc
ggctttgagacagaccttcgcacacatacacaggggcaagccttcgctctgtctgtgttc
caccactggcagattgtgcctggtgaccccttggataagagtattgtgatcaggcctctt
gagcctcagcctgccccccatctggccagagagttcatgatcaaaacccgaagacgcaag
ggtttgagcgaggatgtgagtatcagcaagttcttcgacgatcctatgttgttggagctg
gccaaacaagacgtggtgcttaactaccccatgtga
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