Scomber scombrus (Atlantic mackerel): 134000500
Help
Entry
134000500 CDS
T10651
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04115
p53 signaling pathway
ssco04145
Phagosome
ssco04148
Efferocytosis
ssco04350
TGF-beta signaling pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
134000500
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134000500
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
134000500
04148 Efferocytosis
134000500
09143 Cell growth and death
04115 p53 signaling pathway
134000500
09144 Cellular community - eukaryotes
04510 Focal adhesion
134000500
09142 Cell motility
04820 Cytoskeleton in muscle cells
134000500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
134000500
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
134000500
Membrane trafficking [BR:
ssco04131
]
Endocytosis
Phagocytosis
Opsonins
134000500
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134000500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_ADAMTS
cEGF
EGF_CA
TSP1_CFP_C
EGF
TSP1_CCN
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
134000500
NCBI-ProteinID:
XP_062295827
LinkDB
All DBs
Position
19:complement(16706346..16714702)
Genome browser
AA seq
1172 aa
AA seq
DB search
MMLCGIFLLLMLWSCESARLAESRDDNSVYDLFDLARVNKRHNGVALVKGADPYSPAYRV
LNPDLIPPVPDSSFRDLIDSIQAERGFLLLVNLKQFKKTRGSILTIEKNDGSGPIFEIVS
NGKANTLDVIYSTMNQQQLVSIEDANLATGHWKNITLFVQDDRAQLFVGCEEINVSELDV
PIYQVLSQEVANIARVRIGKGAVKDRFMGVLQNVRFVFGTTLDTVLRNKGCNSGATLTDV
MTLDNPVNGSSPAIRTDYTGHKAKDLQSICGFSCEDIAGMFKELKGLGVVVKQLSNELRK
VSEDSTMLKNQMNIHSGICFHNGIVHMDKDEWTVDGCTECTCQNSATICRKISCPLIPCA
NATVPDGECCPRCGPPSDEAEDGWSPWSEWTPCSVTCGRGIQQRGRSCDRINSNCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGEG
RQTEICQKSPCPINGGWGPWSPWDTCTVTCGGGVQNRKRLCSDPVPKYGGKDCVGDATVS
QVCNKQDCPVDGCLSNPCFTGAKCTSSPDGSFRCGRCPPGYTGNGITCKDIDECKEVPDA
CHTHNGVHRCENTEPGYNCLPCPSRFSGPQPFGRGVEQATAKKQVCTPRNPCQDGSHNCN
KNANCIYLGIYSESMFRCECKPGYAGNGHICGEDTDLDGWPNTDLLCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPKVYNPAQYDADRDDVGDRCDNCV
FEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNEDQRDTDRDGVGDHCDNCPL
EHNPDQIDSDSDRIGDKCDNNQDIDEDGHQNNLDNCPYIANSNQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVLDIDDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKAVNSTTGPGEHLRN
ALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNI
YDKTYAGGRLGLYVFSQEMVYFSDLKYECRDT
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgatgctctgtggcatctttttgctgttgatgctttggagttgtgagagcgcaagattg
gcagagagtcgggatgataacagtgtttatgacttatttgacctcgctcgggtaaacaag
agacacaatggagtggctctggtcaaaggcgcagatccatacagccctgcatacagggtc
ctgaacccagacctgatcccccccgttcccgacagctccttcagggacctcatcgactcc
atccaggctgagaggggcttcctcctcctggtcaacctgaagcagttcaagaaaaccagg
ggcagcattttaaccatcgagaagaatgacgggtccggacccattttcgagatcgtttcc
aatggcaaggcgaacactttggacgtgatctactccaccatgaaccagcagcagctcgtg
tccatcgaagatgcaaatttggccaccggacactggaagaacatcactctgttcgttcag
gacgaccgtgcgcaactctttgtgggctgcgaagagatcaatgtatcagagttggatgtg
ccaatctatcaagtgctgtcccaggaggtggcaaacatcgccagagtgaggattggaaag
ggagctgtgaaagacagatttatgggagtgcttcagaatgtgcgctttgtctttggcacc
actctggacaccgtactgagaaataaggggtgcaacagtggagctaccttaactgatgtc
atgaccctggacaacccagtcaacggctccagccctgccattaggactgattacaccggc
cacaaagccaaagatctgcagtctatctgtggcttctcttgtgaggacatcgcaggcatg
tttaaggagctgaagggactcggcgtggttgttaaacagttgtcgaatgagctccgcaaa
gtgtctgaggacagcactatgctgaaaaatcaaatgaatatccacagtggaatctgcttc
cacaatggcattgtgcacatggacaaagatgaatggactgtggatggctgcactgagtgc
acctgccagaactctgctaccatatgccgaaaaatctcctgccctctgatcccctgtgct
aatgccactgtgcctgatggagagtgctgccctcgctgtggaccaccaagtgatgaagca
gaggatggttggtccccctggtctgaatggaccccttgttcagtgacttgtggtcggggc
atccagcagcgtggacgctcctgtgaccgcatcaacagcaactgtgagggcacctctgtc
cagacccgtgactgctacccccaggaatgcgacaaacgcttcaaacaggacggtggctgg
agccattggtctccctggtcttcatgctctgtgacctgcggtgaaggcgtcatcacccga
atccgcctctgcaactcccccacaccccagatgggtggcagagactgccagggagaagga
cgtcaaaccgaaatctgccaaaagtctccttgtcctatcaatggaggttggggaccttgg
tcaccatgggacacctgcactgttacctgtggtggaggagtccagaaccgcaaacgtctc
tgttctgatcctgtccccaaatatggaggaaaggattgtgttggtgatgccacagtgtct
caagtatgcaacaagcaagactgccctgttgatggttgtctctccaacccatgcttcact
ggcgcaaagtgcaccagctcccccgatggctctttcagatgtggcagatgtccacctggc
tacaccgggaatggcatcacctgcaaagacattgatgagtgtaaagaggttcctgatgct
tgccacacacacaacggagttcatcgctgtgagaacactgagccaggttacaactgcttg
ccctgcccgtcacgtttctccggtcctcagccctttggaagaggagtggagcaggcgact
gccaaaaaacaggtttgcacaccccgcaacccttgccaggatggtagccacaactgcaat
aaaaatgcaaactgtatctacttgggcatctactccgaatccatgttcagatgtgagtgc
aagccagggtatgctgggaatggccatatttgcggagaagacactgacctggacggatgg
cccaatactgacctgctgtgtgtggagaatgctacctaccactgcaaaaaggataactgc
cccaaccttcccaactctggccaggaagatcatgacaaagatggtctgggtgatgaatgt
gaccatgatgatgacaatgatgggatccccgatgatagggacaactgtccaaaagtgtac
aaccctgcccagtatgacgcagacagggatgatgttggcgaccgctgtgacaactgtgtg
ttcgaggctaacactgaccaaaccgacactgataacaatggagagggtgatgcctgtgct
gtcgacattgatggtgatggcattctgaacgaaaacgacaattgcccatatgtttacaat
gaggatcagagagatactgacagagatggagtgggagaccattgcgacaactgccctctg
gaacacaaccctgatcagattgactctgactcagatcgcataggagacaagtgtgacaac
aaccaggacattgacgaggacggtcaccagaacaatttggacaactgcccctacattgcc
aactccaaccaggcagaccacgacaaggatggcaagggtgacgcctgcgaccatgacgat
gacaatgatggcattcctgatgacaaagacaactgccgactggcctttaaccctgatcaa
ctagactctgatggtgatggtcgtggtgatatctgcaaagacgatttcgaccaagacaat
gttctagatattgatgatgtgtgcccagagaactttgccatcagtgaaacagacttccgc
agattccagatggttcctctggaccctaagggcacctcccagattgaccccaactgggtg
gtccggcatcaaggcaaggagttggtgcagactgtcaactgcgaccctggcattgctgtt
ggttttgacgagttcagcgcagtggatttcagtggaacattcttcatcaacacggacaga
gatgatgactatgctggcttcgtttttggctaccagtccagctctcgcttttacacagtt
atgtggaaacagatcacccagacctactggtcccacacacccacaagagctcaaggctac
tctggcctgtctatcaaggcggttaactccaccactgggcctggtgagcacctgaggaat
gccctgtggcacactggagataccccaggacaggtgcgtactctttggcatgaccccaag
aacattggctggaaggatttcactgcctacagatggcacctgacccacagacccaagact
ggacttattagagtggtaatgtatgagggcaagagaataatggccgattctggaaacatc
tatgacaagacctacgctggtgggcgactaggcttgtatgtcttctctcaggagatggtt
tacttctcagacctcaaatacgaatgcagagatacataa
DBGET
integrated database retrieval system
