Scomber scombrus (Atlantic mackerel): 134000544
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Entry
134000544 CDS
T10651
Symbol
cxcl12b
Name
(RefSeq) chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1)
KO
K10031
C-X-C motif chemokine 12
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04060
Cytokine-cytokine receptor interaction
ssco04672
Intestinal immune network for IgA production
ssco04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
134000544 (cxcl12b)
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
134000544 (cxcl12b)
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
134000544 (cxcl12b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
ssco04052
]
134000544 (cxcl12b)
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
134000544 (cxcl12b)
Cytokines and neuropeptides [BR:
ssco04052
]
Cytokines
Chemokines
134000544 (cxcl12b)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Chemokines
134000544 (cxcl12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IL8
Motif
Other DBs
NCBI-GeneID:
134000544
NCBI-ProteinID:
XP_062295895
LinkDB
All DBs
Position
2:13246422..13259068
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AA seq
102 aa
AA seq
DB search
MDVKLLALMTLLAVATRIPTSNAKPISLVERCWCRSTLNTVPQRSIKELKFLHTPNCPFQ
VIAKLKNNREVCINPETKWLQQYLKNAINKVKKTRRRNSKKN
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcaaactactggcactgatgactctgctggctgtggccacacgcataccaacc
tccaacgctaagcccatcagtctggtggagcgctgctggtgtcgttccaccctcaacacg
gttcctcagcgatccatcaaagagctcaagtttctccacacacccaactgccccttccaa
gtcattgccaagctgaagaacaacagggaagtttgcatcaacccagagaccaagtggctg
cagcagtacttaaagaacgccattaacaaggtgaagaaaaccagaagacgcaatagcaag
aagaactaa
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