Scomber scombrus (Atlantic mackerel): 134000783
Help
Entry
134000783 CDS
T10651
Symbol
smcr8b
Name
(RefSeq) guanine nucleotide exchange protein smcr8b
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134000783 (smcr8b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
134000783 (smcr8b)
Membrane trafficking [BR:
ssco04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
134000783 (smcr8b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
Motif
Other DBs
NCBI-GeneID:
134000783
NCBI-ProteinID:
XP_062296250
LinkDB
All DBs
Position
2:27633686..27642371
Genome browser
AA seq
923 aa
AA seq
DB search
MIGSPDLLAFTGTEGFGQEEGQEVHGLPEELSVPLLPSSNPWTSAAQFHTDFILVAEFSE
QVGPKPVLTIPDDPRVIGSFDLNHFSVRIMSVDYQASGPGQAPPTSPGPRLNFSEDSKVI
LGDSAEDAYAYVHHMTLYDLEARGMVRPFCMAYVCSDQAKLMENFSELSTCFSQASESLK
TGNRQAFSMELQRKLQELEYMRLALQPETDPQTVNGFEEMGEKADELEAVTRSISNHRDL
LRQVTSYPNRKLKQPDFLPYDPADSLTDPLPLLPLEPPTSLSSSPSCKSERHLKSLQELC
NAYFLSLMKEQLADTERRLRGDKSALRTTRITRSLSRRLTLTNFLFELWTPEDGEEEERE
SAEAESQRTTESKSSGELLSAEPMSLESFCSCVEEIPIKLVAGEALKVSPDPSVAMEMTG
SVSSSDSIEVLGTEKSYRTQHDIAGSDSRETHVGMADSSLRRAAVEAGVRRVPAYARRAN
SEDSIEVLSTTESIFPDDLTAITEEEAEHQPLSNGLQGEEEEEIILSECQYDDVHREDET
VREEELFNVAVVENESEPPVQVVHEARDDREESVKQITVAKEAMTKEEPDAECLKRDHVN
EDNNPESTTTALQVVEAAKSIEVHLTVPDVQVDFSPPAPLTEVERWSPPRAPLRLLSVDE
VSDCTSFSGTSDLLSPTQSIHGSTRSERKRRRKAGLRALRFLKHHSFSQHAVFCLLSGRP
LVVIGGDEGLLRKQVDALSLFLPAPLADGSAVMPSLTSPLQLTDLLTWRLIGIHRSSSST
SSSVLHSLTRYSRYLALLDLDQKTLRCPPYSGSLIGRLADPHTGISRGITYLLHLESCLT
ALANQALLYTFNPSIQRPDAAGGNNVEQGDDFLLTRGFCTSESDLRVMRFLSDLIKQRHA
GRGPPVLRFYYSSMSLHRNTIVT
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgatcgggtcaccggacctgctggccttcaccgggacggaggggtttggacaggaggag
ggtcaggaggtgcatggtctacctgaggagctctccgtgcctctcttaccttcatccaac
ccctggacctctgctgcacagtttcacacagacttcatactggtggctgaattttcagag
caggtgggaccaaagcctgtgctgacgataccagatgacccacgagtcatcggatcgttt
gatctcaaccacttctctgttcgtatcatgtcggtggactaccaggcatccggccccggc
caggcccctcctacatcccccggcccccgcctcaacttcagcgaggactccaaagtgatc
ctgggagattcagcggaggacgcgtatgcttacgttcaccacatgaccttgtacgacctg
gaagctcggggcatggtgcgtcctttctgtatggcctacgtgtgctcggaccaggcgaag
ctgatggagaacttctctgaactgtcgacgtgcttctctcaggcgtccgagagcctcaag
acgggaaacagacaagcgttttctatggagctgcagaggaaactacaagagctcgagtac
atgcggctggctctgcaaccggagacggaccctcagacagtgaatgggtttgaggaaatg
ggagagaaagctgatgagcttgaagctgtgacgcgttccatctcaaaccacagagacctc
ctccgccaggtcacctcctacccaaacaggaagctcaaacagcccgacttcctgccctac
gacccagccgactcgctcactgatccacttccattactgcctctcgagccccccacctcc
ctctccagctccccctcctgcaagtccgagcgtcatctgaagtcgctgcaggagctttgc
aacgcatacttcctgtccctgatgaaggagcagctcgctgacacagagcgccgcctgcgt
ggcgacaagagtgcactgcgcactactcgtatcacacgctcactgtccaggaggctcaca
ctcaccaacttcctgttcgagctgtggactccagaggacggagaggaggaggagagggag
agcgctgaggcggagtcacagaggacaacagagagtaagagcagtggcgagctcttaagt
gctgaacccatgagcctcgagtccttctgctcctgtgtggaggagatccccatcaaactg
gtggcaggagaagctttgaaggtgagccctgatcctagtgttgccatggagatgacagga
agtgtgagcagcagcgacagcattgaagtgctggggacagagaagtcttatcggacgcag
catgacatcgctgggtctgatagcagagaaacacacgtcgggatggcggacagctctctc
aggcgagcagcggtggaggcaggcgtcaggcgagttccagcgtacgcaagacgggccaac
agcgaggacagcatcgaggtcctgagtaccacagagtccatctttcccgatgacctcaca
gccatcacagaggaggaagcagagcaccaacctctgagtaatggcctgcagggtgaggag
gaggaggagataatactgtcagagtgtcaatatgatgacgtccacagagaggacgagaca
gtccgagaggaggagttgtttaatgtggctgttgtagaaaatgaaagtgagccgcccgtc
caggtggtccatgaagctcgagatgacagagaagagtctgtaaagcaaataactgtcgct
aaggaggccatgaccaaagaggagccggacgccgagtgtttgaagagggatcacgtcaat
gaagataacaatccagagagtacaaccacggcactgcaggttgtagaagcagcgaagtcg
attgaggttcatctgacggtgcccgacgtccaggtggacttttccccaccagctcccctc
actgaggttgaacgatggtctccgccccgcgctcccctccggctgctgagcgtcgacgaa
gtgtccgactgcaccagcttcagcggcacctcggacctcctctctcccacccagagtatc
cacggcagcacccgctcagagaggaagaggagaaggaaggctggactcagagccctcagg
ttcctgaagcaccactcgttctcccagcatgccgtgttctgtctgctgagcggccggccg
ctggtggtcatcggaggagacgagggtctgctgaggaagcaggtggacgcactgagtctc
ttcctgcctgctcctctcgctgacgggagtgctgtgatgccaagtttgacctcgcccctt
caactaaccgacctgctcacctggagactgatcggcatacacagatcgtcctccagtact
tcctccagcgtgcttcactctctgactcgctacagccgttatttggccctgctggacctg
gaccagaagacgctgcgctgtcccccatactccggctccctcatcggcagactggctgat
cctcacaccggcatcagtcggggcatcacctacctgctgcacctggagagctgcctgact
gcactggccaatcaggctctgctgtacacatttaatccatccatccaacgtcctgacgcc
gctggcgggaataacgtcgagcaaggagacgacttcctgttaacgcgaggattctgcacc
agtgagagcgatttgagagtgatgcgtttcctgtctgacctcatcaaacagcgccacgca
ggtcgtggtccaccagtgttgagattctattacagctcgatgagtctccacagaaacaca
attgtaacataa
DBGET
integrated database retrieval system
