Scomber scombrus (Atlantic mackerel): 134002131
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Entry
134002131 CDS
T10651
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssco03036
]
134002131 (smchd1)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
134002131 (smchd1)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
134002131 (smchd1)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
134002131 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_6th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_4th
Ig_SMCHD1_7th
Ig_SMCHD1_2nd
Ig_SMCHD1_5th
HATPase_c_3
SMC_hinge
HATPase_c
MetOD2
Big_3
Motif
Other DBs
NCBI-GeneID:
134002131
NCBI-ProteinID:
XP_062297396
LinkDB
All DBs
Position
20:complement(22094432..22132741)
Genome browser
AA seq
1981 aa
AA seq
DB search
MLNHSASLKRGGGRGGRGGHCKSVKVCDCRHENAGVQEKLLKSGPDFNDFLNELHKEFSI
ESHETFVVSTTDRAVLDYDTFAALEDGSTLYLFRREDQALPAAREETITFQPHYDTLIQS
GTYEYYASNDKNSFPYALAELIDNSLSATAKNPGVRTIEIRMLFDETLGKPAVIVLDNGC
GMTSKQLNNWAVYRLSKFLRDDSKSASKDEKYVRPDHVPRSLNSDISYFGVGGKQAIFYI
GNSVRMITKPVGSPDVHEMVMSKADFEEKERNNEDIYKGTIKNRKPGDSSHVKKNGESFL
RDLIAEESGKDSFTAVVMTGVLPDHIAFLKEDFSVWTRELTHIYHYYIHGVNGNDPRRSS
TNSDQSSKIDIQVTLREKPNKLPRVLNLREVEDDMQTLYINATADTFEFHVSSAVGSGRV
EGLIRYHPFLYDRETYPEEPDTMLAPVDDESDDNESGDLQQARGKRPVFECFWNGRLIPY
TTVPEFEWCAWPKGNAKVPAECYSRFSGVLFTNDTYKVSTNKLTFMDLELKLKSSESIFT
RVVNGQRQRVNIKLEFNKWLQNCHDKLDKQTKFLRFKEIITRPDVPTKKMQFPWATFSSI
QFGGKKYQTGQLVKSQKTQPIFNGTVTRFLLFGNHDRDVFATGGDVEVTLEPKELYDTTK
IIPISKIDRNATVEAINENIDKDRVKLPEVLKVDWPQGVPWPQNAVRPAGTPLGPIKVEI
QNKNGESLSRMPSVTQGTVRKLGIELRLIQHDPKGSQTTLISLFAPDPHKTHYFWFKTID
NLKILGKYSLCLNTVVNESKESKAKVVGGKPLPSFKLNFTITAGKAESFSVGAVRTTLNV
GVPFDIPLEIKDGYDHPTKPPQGLRPELKCSGLELSYEAVDCTEKTFTIRGVKARGKVQN
YQQSKPYDLKVTVPGLKKDSQTIKISLLPGKPHSIHVTQGDEPITVENGNSVTFNVEIHD
EAGNITAHPKLTVRCQVPSLAAVNIDCSSTGAGQLVTKPMNLLIIKGEPQQVKVKFDLLG
WKNVSPVERELNVLPSTRVARMELCCQNDENLILRNKEKIEWLAGGVLENLFYKLYDEAG
REVSLTAEIAATIKVNWTADVNLEDLIQGKLPDIQVPSQVQLKKTGFYQVSYKDQSVSAS
FTITPRPDEPTRLKATVPQNTMKLGETLPGNINLELVDQYDNVTKTLTSACVKLFSVEAE
GLDKSALIFTWQGSSSSVVLTGVRFQSGTPGSREMIFSYKNYVERVIVEVTAGVPTQFKL
ISGPEMPLQVLNDQGIPTAFVIQLCDQWGNVSPDQRVVVELRPSPPALKVRTSVTSQPVN
AEGKVSFVVESVSGPKGYYQLEFIASFNKRPINSPAVNLTVIPNPNKPVSLSVEYNTNAT
FPAAGVFPVFSVTVVSDEGSPITTFNPAAASMFLWMGTPSGGMPPITVPELKPSKPRANE
KKDRFHFRDKEIPEKAGDYVMQFSLLVDTENVLYSDQITIHVGANQPVKLGPDFELPAPV
VSYTKDIANRTLVENMTLRITDSYGNTAGQDLEGKVVIFIKSPDDDRNKSLPLFEGKTNK
VQFCLKKGKINIPRLAIMQESPGEDNSLYILLFTPEVSTALAPFKLPFHFYNDSSNQRIM
AELSIKKHALTEELASQREYYNTYRELLQELTAQLQDASSKEADLRNQLILNMNIPQPVN
MQSIDRLINEKTPEMKRSHTNRRICSIPNQFKGKDVLGKVGHLAFVQDDDAARVISWHIR
GYIDCVITRTTEAAQIIYRETQGRQKVMPLDSVFVNSGNRPLPHMKNGRMVFNPPGNPMF
AKDLLIYPQEKESCEIVFKNILRDTILIDDLDSANHYRRAVVQNKMPCPTILTRQGDMIS
GQGMFGGAQNKAPPIRDLQVFAAPLPQEYHDLNKQIEMLNKYKSVLKSKEDAHMDREEHR
KALTSPDMQNKQREMKEKEKHLEQIERQLASMHTKPAKRGAESAAEPSGITPKRTRQMNN
K
NT seq
5946 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaccatagcgcatctctcaagcgaggaggaggaagaggaggaagaggaggacac
tgcaagtcggtcaaagtttgcgactgtcgccacgaaaacgccggagttcaagagaaactg
ctcaaaagtggtccggactttaatgactttctcaatgagctgcacaaggaattttccatc
gagtcacatgaaacatttgtggtgtccacgacagacagagcggtcctggattatgacaca
tttgctgcactcgaggatggcagcaccctctacttgtttcggcgggaggatcaagctctg
ccggcggcccgggaggagaccatcacgtttcagcctcattacgatacgctgattcagagc
ggcacgtacgagtactacgctagcaatgacaagaactcatttccctatgcacttgctgag
ttgattgacaattccctttcagccacagctaaaaacccgggtgtgaggacaatagagatc
cgaatgctgttcgatgaaactcttgggaaacctgcagtgatcgtgttagataacgggtgc
gggatgacatctaagcagctcaataactgggcagtttacagactctctaaatttctcagg
gatgacagcaaatctgcaagcaaggatgagaagtacgtacggcctgatcatgtccctcgt
agtctcaacagtgacatatcctactttggagttggaggaaaacaggcgattttctacatc
ggaaactcagtcaggatgatcaccaagccagtaggctccccagatgttcatgagatggtg
atgtcaaaagcggactttgaggaaaaagagaggaacaacgaggatatctacaaagggacg
ataaagaacagaaagcccggtgattcttcacatgtgaaaaaaaatggggagagtttccta
cgtgatcttatagctgaggaatctgggaaggacagcttcaccgccgtcgtcatgacagga
gttctgcccgatcacatcgctttcctcaaagaggactttagcgtttggacccgagagctc
actcacatttatcactattacattcatggagtcaatggaaatgacccgagaagaagctcc
acgaactcggatcaatcctctaaaattgacattcaggtgactctgcgggagaagcccaac
aagttgcctcgtgtgttgaatctgagggaagtcgaggacgacatgcagactctgtacatc
aacgccaccgcggacacgttcgagtttcacgtctcgtccgcagtcggcagtggcagagtg
gagggactcattcggtatcaccctttcctctacgacagggagacttaccctgaagagcca
gacactatgcttgcgcccgttgatgacgagagtgacgataacgagtccggagacctgcag
caagcgagagggaagaggcctgtgtttgaatgtttctggaacggacgacttataccttac
accacagttccagagtttgagtggtgcgcttggcccaaaggaaacgcaaaggtgcctgcc
gagtgttacagtcgcttttcgggcgtgcttttcaccaacgacacgtataaagtcagcacc
aacaagctcaccttcatggacctggagctcaaactgaagagcagtgaatccatcttcaca
cgtgttgtgaacggacagagacaaagggtcaacattaagttggagtttaacaagtggctc
caaaactgtcacgataagctggacaagcaaaccaagttcctgcgcttcaaggaaataata
acacgaccagacgttcctactaagaaaatgcagttcccctgggcgacgttctcctccatc
caatttggcggcaaaaaataccaaacaggccaacttgtgaagtctcagaaaactcagccc
atctttaatgggacggtgactcggtttctgctgtttggaaatcacgatagagacgtgttt
gccacaggaggagacgttgaagtgactctggaacccaaagagctttacgacacaaccaag
atcatacccatatccaagattgacaggaacgccaccgttgaggccatcaacgaaaacatc
gacaaggatcgggtcaaactcccagaggtgctgaaagtggactggcctcagggtgtccct
tggccccagaacgctgtgcgtccagctgggactccgttaggaccgatcaaagttgagatc
cagaacaagaacggggagtcgttatccaggatgccgtcagtgactcaggggacggtgaga
aagctcggcatcgaactcagactcatccaacatgatcctaaaggaagtcagacgacactg
atatctctttttgccccagacccacacaagactcactacttctggtttaaaacaattgat
aatctgaaaatcctggggaagtacagcctgtgtctgaacactgtggtaaatgagagtaaa
gagagtaaagctaaggtcgttggagggaaaccgctcccaagcttcaaactcaatttcacc
atcacagcgggtaaagctgagagcttctcggtgggagcagtgagaaccactctgaatgta
ggagtgccgttcgacattcctctggagataaaagacggctatgatcacccaacaaagcct
cctcagggtctcagacctgaactcaaatgcagtggcctggagctgagctacgaggcagtg
gactgcactgagaagactttcaccatcagaggtgtcaaagcaagaggaaaagtccagaat
taccaacaatcaaagccatatgacctgaaggtgaccgtacctggcctgaaaaaggactca
cagactataaaaatcagccttttgcccggtaagccacattccatccacgtaacccaggga
gacgagccaatcacagtagagaacggaaactccgtcactttcaacgttgaaattcacgac
gaggccggaaacatcaccgctcaccctaaactgactgttcgctgccaggtgccgtcactt
gcagcagtgaacattgactgcagcagcactggagctggacagcttgtcacaaagcccatg
aacctcctaataatcaagggagaaccacaacaagtcaaagtcaaatttgacctgctgggt
tggaagaatgtatcgccggtggagagagagctgaacgtgctgcccagcaccagagtggcc
cggatggagctctgctgccagaatgatgagaatctgatcctgaggaacaaggaaaagatt
gaatggttggctggaggcgtgctggagaacctgttctataagctgtatgatgaagctggc
agagaagtctcgctcactgctgaaatagccgctacgatcaaggtcaactggacagctgat
gtaaatcttgaagatctgatccaggggaagctgccggacatacaggtgccttctcaggtg
cagctgaagaagacgggcttctaccaagtgtcctacaaagaccagagtgtgtccgcctcc
tttactattacgcctcgtccagatgaaccaacacggctaaaagcaacggtgccccaaaac
acgatgaagctgggagaaactctacctggaaacatcaacttggagcttgtggatcagtac
gataatgtaacgaagacgctgacttccgcctgcgtgaaactcttctctgtggaggctgaa
ggtctggacaaatcagccctcatcttcacatggcaggggagcagcagttctgtcgtattg
acgggggtccggttccagtccgggacccccggctccagagagatgatcttcagctacaag
aactacgtggagcgcgtcatcgtggaagtgacggccggagttcctacgcagtttaaactc
atcagtggaccagagatgcctttgcaggtgttgaacgaccaaggcatccccacagcgttc
gtcatccagctgtgtgaccagtggggaaacgtctccccagaccagagggttgtggtggag
ttgaggccttcacctccagcgctgaaggtgcggacatctgttacttcacaacctgtgaac
gcagagggaaaagtgtctttcgttgttgagagtgtgagtggaccaaaggggtactatcag
ctggagtttatagcttccttcaacaagaggcccatcaatagtcctgcagtgaatctcaca
gtcatcccaaaccccaacaaacctgtcagcctgtcagtggagtacaacaccaacgctacg
tttcctgctgcaggcgttttccctgtgttctctgtgaccgtggtgtctgatgaaggaagc
ccgattacgacttttaacccggccgccgcctccatgttcctgtggatgggaacgccatca
ggaggaatgcctccaataacggttcctgaactgaaaccgagtaaaccgagagcgaatgaa
aagaaggaccgttttcacttcagagataaagaaatcccagagaaagctggagactacgtc
atgcagttctctctgcttgttgacacagaaaacgtcctgtacagtgatcagatcactata
catgttggggccaatcaacctgtcaaactgggacctgacttcgagcttccagccccggtt
gtttcctacactaaagacatagccaaccgaaccttagtggagaacatgactctgaggata
acggattcatatggtaacacagcggggcaggacctggaggggaaggtggtgatttttata
aagagtcctgatgacgacaggaacaaaagtctccctttgtttgagggcaaaaccaacaaa
gttcaattctgcctgaagaaaggaaagatcaacatccctaggctggccatcatgcaggaa
agccccggcgaggacaacagtttatacatcctgctcttcacacccgaagtctcaacggcc
ctcgctccttttaagctccctttccatttttacaatgactcatcaaaccagcggataatg
gctgagctgtccatcaagaagcatgcactcactgaagaactggcttcccagagagaatac
tacaacacatacagagaactccttcaggaactgaccgctcaactccaggatgcaagcagt
aaagaggctgacctcagaaatcagctgatcctgaacatgaacataccacagcctgtaaat
atgcaaagtatcgacagactgataaacgagaagacacctgaaatgaaaaggagtcatacg
aacagaagaatctgctccattcccaaccagttcaaggggaaggatgtactgggaaaggtt
ggccacctggcctttgtgcaggatgacgatgccgctcgggtaatttcctggcacatcagg
ggttacattgattgcgtcattaccagaacgacagaagcagcgcagataatctacagagaa
acgcagggcaggcagaaagtcatgccactcgacagcgtgtttgtgaattcaggcaacagg
ccgctgccacacatgaaaaatggccgcatggtctttaatcctcctgggaacccgatgttc
gccaaagacctcctgatttacccccaagaaaaggaaagctgtgaaatcgtgtttaaaaac
atcctcagagataccatcctcattgatgacctggactctgcaaaccactacagaagggcg
gtggtacagaacaaaatgccgtgtcccaccatcctgaccagacagggggacatgatcagt
ggccagggcatgttcggaggcgcacagaacaaagctccaccaattcgagatttacaagtg
tttgcagctcctctcccacaggagtaccacgacctgaataaacaaatagaaatgctcaat
aagtacaagtcggttctgaagagcaaagaggatgcacacatggaccgtgaggaacacagg
aaagcactgacatctcctgacatgcagaacaagcaacgagaaatgaaggagaaagagaag
catctagagcagattgagagacaacttgcatcaatgcacacgaaaccagcgaagaggggt
gctgagagtgctgctgagccatctggcattactccaaagagaacaaggcagatgaacaat
aaatga
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integrated database retrieval system
