Scomber scombrus (Atlantic mackerel): 134002386
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Entry
134002386 CDS
T10651
Symbol
nod2
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 2 isoform X1
KO
K10165
nucleotide-binding oligomerization domain-containing protein 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
134002386 (nod2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssco04054
]
134002386 (nod2)
Pattern recognition receptors [BR:
ssco04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
134002386 (nod2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
CARD
NLRC4_HD2
LRR_6
WHD_NOD2
LRR_4
AAA_16
nSTAND_NTPase5
AAA_22
AAA_29
NTPase_1
DUF695
Viral_helicase1
AAA_30
Sigma54_activat
AAA_25
nSTAND3
CheZ
Motif
Other DBs
NCBI-GeneID:
134002386
NCBI-ProteinID:
XP_062297747
LinkDB
All DBs
Position
1:9875277..9892768
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AA seq
986 aa
AA seq
DB search
MFNRDLVLKQRAEILHALCSSGSTEHLERVLDKLLSQGELIWEEYQNIQVQGRALYTNVR
QLLDLVYTKGEDTCEFFLAAVKQVLPEAQGAGITFSGCCSNLEKTGESQSTSSQTLLTQR
ASLVTKLQACIDGALEALVESGHFTSSDCDDVLLPIHTPSQQARRLLDHVRSKGESAAKC
VLHYIQESESSLNQEKWTLSKEFSKYQKKLSSSVSAQSCFLSSYGRTSHMPLDEIYTEAQ
LELANDFADLSGALDLDDIVGAAGTVNDEADTVLVSGEAGSGKSTLLQRLHLLWARGVSL
KGFLLLFPFSCRRLNSEQRELSVQELLFQHCCWPDKEQEEIFQFILDHPHLILFSFDGLD
ELKQGFSDEHMVCCPTQRAPVNILLFNLLQGFLMKGVRKVVTSRPEAVGPMLKKHLRKEV
LLKGFSPSGIDCFVKKHHRDPTVAAKVLESLQMNTALLGLCHSPVLCWIVSQCHKELLGC
GEGSPQTITDVYLMILQHFLQHQSPLKSTMGLGWLQEHIKVVLHLGQLAFEGLGTSCYIF
TDTDLETCYVTEKDICMGFLILSKDMSSTHSKRYEFLHVTMQCFFAALFIVLSNNTDRST
IHKLFEPQNMKGTRLSSNCFMGCIPSSDQQEQGLEGESVIAETSNLQITATFVSGLLSQR
HRSLWFHCCPSAGMEKKVRQVVKCLSKGMHKHFKSIPQPVQGEKKSMHAMPGFVWLIKCI
YEMQECKIAKDAMSKLEVDHLKLTYCNIGPVECTALAYVLQYLRNPVGLQLDYNSVGDVG
VEQLLPCMHICNSLYLRNNNITDEGIRKLIAKGIQCDNFQKIALFNNKLTDACTQHFSLL
LKTKQNFLSLRLGNNNITAEGAKQLAEGLKFNHSLQYLGLWGNKISDTGAEALASALEGS
KTLVWLSLVGNGVGSAGAYALAKVIESSASLEELWLTENCITKAGVECLIQALERNTHVK
SVWLRNNDLSLEEVEEMTRCESRLIF
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaccgggaccttgtgttgaaacaacgggcagagatactgcatgcactgtgtagc
agcggatctactgaacatctggaaagggtactggacaaactcctgtcccaaggggagctc
atatgggaggagtaccagaacatacaagtacagggtagggcactgtataccaatgtcaga
cagttgctcgacctggtgtacacaaagggtgaggacacctgtgagttcttccttgctgct
gttaaacaggtcctgcctgaggcacagggagctggcatcaccttttcggggtgctgttca
aatctagaaaaaactggagaatctcaaagcacatcaagtcagactcttctgacacaaaga
gcaagcctggtcactaagctacaagcctgcattgatggcgctctagaagctttggtggaa
tcaggacacttcacctcatcagactgtgatgatgtgctgttacctatacataccccctca
cagcaggcgagacgtttgcttgaccatgtcagatcaaaaggtgagtcagcagcaaaatgt
gtactacactacattcaggaatcagagtcctcactgaaccaagagaaatggaccctttcc
aaagagttctcaaaatatcaaaagaagctcagcagttctgtgtctgcccagtcctgcttt
ctcagcagctatggacggaccagccacatgcctctggatgagatctacactgaagcccaa
ctggaactagctaatgactttgctgatctcagtggagctttagacctggacgacatagtt
ggtgcggcgggtacagtaaatgatgaggcagacacggtgctagtatctggtgaggcaggc
agtgggaagagcaccctactgcagaggctgcacttgctttgggctcggggggtttccctc
aaaggatttctcctactgtttccattcagctgtcgcaggttgaactcagagcagagggaa
ttgtctgtccaagaactgttgtttcagcactgctgttggcctgacaaggaacaggaagag
attttccagttcatcctagaccacccacatctcatcctcttcagtttcgatggcctggat
gaactcaagcagggcttttcagatgaacacatggtctgctgccccactcagcgtgcacct
gttaatatactgttgttcaatttacttcaaggtttcttaatgaagggtgtgagaaaagtg
gtgacaagtcgcccagaggcagtaggccctatgctgaagaagcaccttcgcaaagaggtc
ctcctgaaaggcttttcccctagtggcattgactgttttgttaagaagcatcacagagac
cccacagtggctgcgaaggttttggagtccctacagatgaatacagctttgcttggactt
tgtcatagtccagtcctctgctggattgtctcacagtgccataaggagctgctgggctgt
ggagagggcagcccacaaaccataacagatgtttacttaatgatcttacagcacttcctc
caacaccaaagccccctgaagagcaccatggggttaggttggctacaggagcacataaaa
gtggtcttgcatctagggcagcttgcttttgaggggttaggaacatcctgttacatcttt
acagacacagacctggagacttgttatgtaactgaaaaggatatttgcatgggctttctc
atcctgagcaaagatatgtcctccacccacagcaaacgatatgaattccttcatgtgact
atgcagtgtttctttgctgctctgttcattgttttgtcaaacaacactgaccgctccacc
atccataagctctttgagccgcagaacatgaaggggacacgcctgagtagcaactgcttc
atgggctgcataccctccagtgaccaacaagagcagggtttggagggggagtctgtgata
gcagaaacatcaaatctgcaaatcacagccacgtttgtgtctgggctactgtcccagcgg
catcgaagtctatggttccactgctgtcccagtgctgggatggagaagaaggtcagacag
gtggtcaaatgtctctccaaaggcatgcataaacacttcaagtctatccctcaacctgta
cagggggagaagaagagcatgcacgcaatgccaggctttgtttggcttatcaaatgcatc
tatgagatgcaggagtgcaagattgctaaagatgctatgagtaagctggaggtggaccac
ctgaaattgacctactgtaacattggccctgtggagtgcactgcactagcttatgtactc
cagtatttaaggaaccctgttggccttcagctggactacaattctgtaggcgacgtgggt
gtggagcagcttcttccttgcatgcatatttgtaattccctgtacctcagaaataataac
atcacggatgaggggattcgcaaactgattgctaagggtatccagtgtgacaacttccag
aaaattgcgcttttcaacaataaactaactgatgcttgcacacagcacttttctcttctt
ctgaagaccaagcagaattttctttctctgaggctaggcaacaacaatataactgcagaa
ggagcaaagcagctggcagaaggactgaaattcaaccattcactgcagtacttagggctt
tggggcaataagataagtgatacaggagctgaggcccttgccagtgccctagagggaagc
aaaactcttgtgtggcttagcttggttggcaatggtgtagggagtgcaggagcttatgcc
ctcgccaaagtgatcgagagcagtgcatcactggaagagctttggttgacagaaaactgc
ataaccaaggcaggagtagaatgtctgattcaagccctggaacgcaatactcatgtaaag
tcagtatggttgagaaacaatgatctcagtttggaagaggtggaggagatgacacgatgt
gaatcaagactgatcttctga
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