Scomber scombrus (Atlantic mackerel): 134003110
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Entry
134003110 CDS
T10651
Name
(RefSeq) breast cancer type 1 susceptibility protein-like
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03440
Homologous recombination
ssco03460
Fanconi anemia pathway
ssco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
134003110
09124 Replication and repair
03440 Homologous recombination
134003110
03460 Fanconi anemia pathway
134003110
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssco01009
]
134003110
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
134003110
03036 Chromosome and associated proteins [BR:
ssco03036
]
134003110
03400 DNA repair and recombination proteins [BR:
ssco03400
]
134003110
Enzymes [BR:
ssco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134003110
Protein phosphatases and associated proteins [BR:
ssco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134003110
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134003110
Multi subunit type E3
BRCC complex
134003110
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
134003110
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
134003110
BRCA1-A complex
134003110
BRCA1-B complex
134003110
BRCA1-C complex
134003110
BRCA complex
134003110
FA (Fanconi anemia) pathway
Downstream FA components
134003110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
RTT107_BRCT_5
zf-C3HC4_3
zf-RING_UBOX
zf-RING_2
RING_XB3-XBAT31
zf-RING_5
zf-Nse
zf-MIZ
zf-RING_4
zf-RING_6
Rad50_zn_hook
zf-RING_10
TRAF3_RING
Zn_Ribbon_TF
Prok-RING_4
zf-PARP
zf-ANAPC11
PilO
PTCB-BRCT
DUF8045
Sina_RING
Motif
Other DBs
NCBI-GeneID:
134003110
NCBI-ProteinID:
XP_062298226
LinkDB
All DBs
Position
21:14538552..14561472
Genome browser
AA seq
1441 aa
AA seq
DB search
MKTPNATDVKKGIAVLWETLQCPICLDLMTAPVSTKCDHQFCKFCMSKLLDNTKQNNASC
PVCKAKITKRSLRESPGFQRLVAGLQDMIQAYEHDTGTNYFTGMSQQNRQSSVTDAEANK
QTCNGSSGDTPGTDPDNVESADNDDPPMSHSSTVAAQNGFARLMGLEDTSPLTTENDGLD
SGLGGALPIPENKTPSPTDYAEPLEAETSEVVEKATLTHKTRGKMRHAKLEESSLLPLLI
SSETENQPRRRSLRKKQKMDLEPENFLEQRQKRSVEKVAEWLMKVPTEESLELEKPAEDT
CDPDDSGSSSSTSTINVKLHYSDMNPKRENRAKALEEQVFGAVYKRDRRGNRTTSPPLNV
FVEPPTHPLAIETMTPEKVPKRKKNRITSADFVEKSSSEDKYESDMEEEQQMTGQINDTC
SEKFKEAEEKVTEENNEKETRDKYEKGLNNIPERDEVPCLVSDIKPYQPGRKLKKRMRDT
LQQVDSDLQERAKANVESSEQKKTDKRKGKNTKSEKSKSGRVVKPLVLVGVQNGETSPKT
RQVEEEIQVHIENYPSSDDHETPIMRSTRRSRRLQLFAEEVQEGPKKACAPKKSIHEKDS
SDAEQSADAKGGILCNSASPKNGNLSKLNGCIYDQDIGGIENMEFGERTSSLRPTEDVTS
VKESVAETLSEAVEDPALESDNPTDECPNNIQSQTSACKTKCAIKEIEEDKNDSELDTEQ
LLRSFKSTKRKSFHLGGSDVKRSRSLGEENVHEERSDSGSGVKGTKQLRNSDITNPHVLQ
DNDSLSCSDWIPPSNSSILTRNRVSKKGDQVVEEGLIPETSSSIQDSAENFGNSVSSALS
PNKVSKHETEIPHFSVVPQVVDSGLCFRAVELSEGGEREELNKPTRCSQITDSKLGCTAR
DAEKVKEMRQNISQENSAASGKQSPVNAAEGFLNAESLTPDGLGIPVVQVSPEIKTSSHR
SEELSIHSSFKSNLIKRKKAQRLQSSSESDCSGSKEELPTLTQIFGTSAPPSAVCLDVQD
QADSRCEGACVTADAAEQLSRPPACPSPDCVNSSQASVDLFGTPDECDVPVNDSSVIESS
QFSSDVLVTQQKIEMQKELFRLEKLMALVSEVLQEKEGSPASKVPSETHPSSKTTGPDVH
RPLPCEQSARQSSDRNDVPDAGLEPDSRPGDGKEMGNEEMAVQRSTHTGSSVKATGASKT
PSSSSAAKTLKGCSSPADGQENKENNTPERDRSKAKMVLVSSGLEPTEQIMVKKFAKRVG
ARVVSRVTPEVTHIIMSTDERLVCERTLKYFLGIAGRKWVVSFKWIAECFKQKKLLDETI
FEVRGDVVNGPNHQGPTRARTTDDNNLLMKDYQICFQGPFADMTTDELEWMVELCGAVVV
TDPLQLDDKQKSHQLVIVQPGSESRPSTYSSLSKQATVVTRGWLLDTVATYTLQNYSNYT
T
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccccaaatgccacagatgtcaaaaaggggattgcagtcctttgggagactctg
cagtgccccatatgtctagatttaatgactgcacctgtatccacaaagtgtgaccaccag
ttttgcaaattttgtatgtcgaagcttttggacaacaccaaacaaaacaatgccagctgt
ccagtgtgtaaagccaagataacaaaaaggagtttgcgtgagagcccagggtttcagaga
cttgtagcaggattgcaagacatgattcaggcctatgaacatgacactggcacaaactac
tttactggaatgtcccagcaaaacagacaatcaagtgtcacagatgctgaagctaataaa
caaacttgcaatggttcatctggagatacacctggtactgaccctgacaacgtggaaagt
gcagacaatgatgaccctccaatgtcccactcttcaactgtagcagcccagaatggattt
gcaaggctgatgggacttgaagacacaagtcccttgacaacagaaaatgatggtctggat
agtggcctcggtggggccctaccaattccagaaaataaaacacccagccccaccgattac
gcagaaccactagaagcagaaacatcagaagttgttgaaaaggcaacgttaacacacaaa
actagaggcaaaatgagacatgccaaattggaggaatcctcgcttcttcctttactaatt
tctagtgagacagaaaaccaacctagaagacggtccttaaggaagaagcagaaaatggat
ttggaacctgaaaattttttagagcagagacagaaaagaagtgttgagaaagtcgctgag
tggctcatgaaagttccaactgaggaaagtctggagttagagaaacctgctgaagacacc
tgtgacccagacgactctggcagctcttcttccacttcaacgataaatgtcaagctacac
tatagtgacatgaatccaaagagagagaatcgtgctaaagcgcttgaagagcaggtgttc
ggggctgtctacaaaagagaccgaagagggaacagaaccacctctcctccactaaatgtg
ttcgttgaaccaccaacacaccccttagctatagaaacaatgacacctgaaaaagtaccc
aaaagaaagaagaacagaatcacttctgctgattttgtagagaagtccagctctgaagat
aaatatgaaagtgacatggaggaagagcaacaaatgacagggcaaataaatgatacctgc
agtgaaaagtttaaagaagcagaagagaaagtcacagaggaaaataatgaaaaggaaacc
agagacaaatatgagaaaggattaaacaacattccagaaagagatgaggttccctgtctt
gtgtctgatattaaaccatatcaaccaggcagaaagttgaagaaaaggatgcgtgacact
cttcagcaggttgacagtgatttgcaagagcgagctaaggcaaacgtggaaagttctgaa
caaaagaaaactgacaagaggaaaggtaaaaacactaagtcagaaaaaagcaagtctggc
agagtggtgaagccccttgttctggttggagttcagaatggagagaccagtcctaaaact
agacaagtagaagaagaaatccaagttcatattgagaattaccctagcagcgacgaccac
gaaacccccatcatgaggagcacaaggagaagcagaaggcttcaactctttgccgaggaa
gtccaggaaggtcccaagaaagcatgtgctccaaaaaagagtatacatgaaaaagacagc
agtgatgcagagcaatctgcggatgctaaaggtggtatattgtgtaattcggcctcacct
aaaaatggaaacttgtccaaactaaatggatgcatttatgatcaagatattggaggaatt
gaaaacatggagtttggtgaaagaacgtcttctctgagaccaacagaagatgttacatct
gtcaaagagtccgttgctgaaactctgtccgaggctgtagaagatccagcacttgaaagc
gataatccaactgatgaatgcccaaataacattcagtcgcagacttcagcttgcaagact
aaatgtgccataaaagaaattgaggaggataagaatgacagcgagctggacacagagcaa
ctgctcaggagcttcaaatccactaaaaggaaatctttccatcttggaggttcagatgtg
aaaaggagcagaagtttaggtgaagaaaatgtgcacgaggagagaagtgatagtggttct
ggagtcaaagggacaaaacagctgagaaactctgacatcactaatccacatgtgttacaa
gacaatgacagcttatcttgtagtgattggatccccccatctaactcgtccatcctgaca
agaaatagagtctccaagaaaggagatcaagtggttgaagaagggttgatccctgaaacg
agtagctcaattcaggacagtgctgaaaacttcgggaacagtgtcagtagtgccctcagc
cctaataaagtgtcaaagcatgaaacagagattcctcatttttctgttgtccctcaggta
gtagattctgggctctgcttcagagctgttgagttgtctgaaggtggtgaacgtgaggag
ttaaacaaacccacaaggtgttctcaaatcacagacagtaagcttggttgtactgcgagg
gatgctgagaaagtgaaggagatgagacagaacatttcacaggaaaattcagctgcctct
ggaaaacagagtccagtcaatgcagcagagggtttcttaaatgcagagtctttaactccc
gacggcctcggaataccagttgtccaagtgagccccgaaataaagacgagcagccatagg
agtgaagagctcagcatccattcctccttcaagagcaacctgataaagaggaagaaggct
cagaggctccagtcttcatccgagtctgattgcagcggatccaaagaagaattaccaact
ttgacccaaatttttggaacatcagctcctccctccgcagtgtgcctggatgtccaggat
caggcagactccagatgtgaaggtgcatgtgttacagctgatgcagcagaacagctgagc
cgtccacctgcgtgcccgagccccgactgtgttaattccagccaagcgtctgtggacttg
tttggcacaccagatgaatgtgatgttccagtaaatgactccagtgttattgagtcatca
caattctcaagcgatgtccttgtcactcagcaaaagatagaaatgcaaaaggagctgttt
aggctggagaaattgatggctctggtgtcagaggtccttcaggagaaagagggcagccct
gccagcaaagtcccctcagaaacacatccgagctctaagaccacaggcccagacgtgcac
agacccctcccatgtgaacagagtgcaaggcaaagttcagacaggaatgatgttcctgat
gcaggactagagcctgattcacgaccaggtgatggtaaagagatgggtaatgaagagatg
gccgtgcagcgctccacgcacacagggtcgagtgtaaaagccaccggagcctccaaaaca
cctagttcaagctcagcagccaaaacgcttaaaggctgtagttcaccagcagatgggcaa
gagaataaagaaaacaacactcctgagagagacaggagtaaagctaaaatggtgctagta
tcatctggattagagcccactgaacagataatggtgaaaaagtttgccaaacgagtcggc
gcccgtgtggtttcccgggtgacgccagaggtcacacatatcataatgtccacagatgaa
cgactggtgtgtgagcgcacgctgaagtacttccttggcattgcaggcaggaagtgggta
gtgagcttcaagtggattgctgagtgcttcaaacaaaagaaactcttagatgagacaatc
tttgaagttagaggtgatgtggtgaatgggcccaaccaccagggccccacgagagctcgc
accactgacgacaacaatctgctcatgaaggactaccaaatctgcttccaaggacctttt
gcagacatgactacagatgaactggagtggatggtggagttatgtggagcagttgttgtg
acagatccacttcagctcgacgataaacagaagtcccatcagctggttattgtgcaacct
ggatcagagtcgcggccgtccacgtacagcagtctctctaaacaggctacagttgtgact
cgcggttggctgttggatacagtggcaacttacaccctccaaaactatagcaactataca
acatga
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integrated database retrieval system
