Scomber scombrus (Atlantic mackerel): 134003793
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Entry
134003793 CDS
T10651
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
134003793 (scn4aa)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
134003793 (scn4aa)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
Lustrin_cystein
GPHH
DUF1492
Motif
Other DBs
NCBI-GeneID:
134003793
NCBI-ProteinID:
XP_062299120
LinkDB
All DBs
Position
21:23540100..23557854
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AA seq
1873 aa
AA seq
DB search
MASLLPPPGIDVFRRFTQQSLAEIERLQEEIKKAPVVAGKDDEELPVPHPDLEAGKGLPM
IFGEPPSELLNTPLEDPDPFYKAHKTFIVVTKGNTLYRFNAEPACYILSPFSVVRRGAIK
ILIHSLFSMFIMITILSNCVFMTMSNPPAWSKTVEYVFTGIYTLEATIKVLSRGFCVGSF
TFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVAALIQS
VKKMVDVMVLTVFALAVFALVGLQLFMGNLRQKCVRWPVPSNETDFFNNTSIFNDTVSFN
DTMSFNDTMGFNDTAYLNSTFNFIEYIENPDNQYYVEGSLDALICGNSSDAGKCPEGYTC
MKAGDNPNYGYTSFDSFGWSFLALFRLMTQDYWENLFQLILRAAGKTYMLFFVVIIFLGS
FYLINLILAVVAMAYEEQNQATQREAIEKEEEFQRLLEQLKNQERAQLLGSQATLTSKKS
LSHCTASELADDEQSLEPDEVVKDCNGRVIPKLLVRSPTMVQPAADYELREKSLGSVHSM
FHLDQPGPRTRSASAVSVLTAKEGKLEEAQRPCPPGWYRFADRFLKWDCCERWVVIKKWM
HFVVMDPFVDLAITICIVLNTLFMAMEHYPMTPEFDYMLSVGNLVFTGIFTSEMVFKLLA
MDPYYYFQVGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIK
IIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYKECVCKISSDCELPRWHMHDFFHSF
LIVFRILCGEWIENMWNCMEVAGTGMCLVVFMMVMVIGNLVVLNLFLALLLSSFSGDNLS
AGDEDGELNNLQIAIGRITWGINWFKAFLIRTILQMFEGKPQESEEGPGDDEDPKTEGIE
MNHLEDSQNFKMTDGISNCLVECRPSGFIVDGELILDVPIAQGESDFENLGEDDEDEDDA
DDSTDSDDDGDSSVCSTVDYQPPEPEPEEVEEEEPEPVEPEACFTDDCFRRMPCLVVDIT
KDRGKKWWNLRRACFTIVEHDWFETFIIFMILLSSGALAFEDIHIERRRTIKTILEYSDK
VFSYVFVIEMLLKWVAYGYKTYFTNAWCWLDFFIVDISLISLAANWMGYSELGPIKSLRT
LRALRPLRALSRFEGMRVVVNALIGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKFYRCI
NTTTEELFEMSVVNNRSDCMAIMEATQDARWVNVKVNYDNVATGYLSLLQVATFKGWMDI
MYAAVDSREVEEQPSYEINLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGDKD
IFMTEEQKKYYEAMKKLGSKKPQKPIPRPTNLIQGMVFDFISQQFFDIFIMVLICLNMVT
MMVETDNQSPEKEDFLFKVNVAFIIVFTGECVLKLCALRQYFFTNPWNVFDFVVVILSIA
GTMLSDIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALLMSLPALFNIGLLL
FLIMFIFSIFGMSNFAYIKKEAGIDDIFNFETFGGSIICLFQITTSAGWDSLLLPMLNRE
APDCDPTFDNPGTDVKGNCGSPGLGMMFFCTYIIISFLVVVNMYIAIILENFNVAQEESG
DALCEDDFEMFNETWEKFDIDGTQFIKYSQLSDFCDALQEPLKVAKPNRHRLIDMDLPLV
IGDRIHCLDVLMAVTQMVLGDTVEMAAMRLSIEAKFILSNPTTDSFAPITTTVRHKEEEW
AAVVIQKAYRHHLLKRCIRHAAFMHHSKKTERKETDGDPPEKEGLLARKMGVLYGSNLEL
AEEMEQTALELLVSQQPLYPETLSHYTEAEAGPEPPEPNIMVVPVEITNEVLLHSAPNPY
LFALQANLRESIV
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggcatccctgctccctcccccaggcatcgatgtgttccgccgcttcacgcagcagtca
ctggcggagatcgagaggctccaggaggaaattaaaaaggccccagtagtagcgggcaag
gacgatgaagagttaccagtcccacaccctgatctggaagcaggcaagggtctgcccatg
atcttcggagaacctccatcagagctcctaaatacacctctggaggacccggacccgttc
tacaaggcacacaaaacattcattgtggtcaccaaaggaaacacgctctacaggttcaat
gctgaaccggcttgctacattctgagcccctttagtgtggttaggagaggagccatcaaa
attctcatacattcattatttagtatgttcatcatgattacgattctgtcgaattgtgta
ttcatgacgatgagcaacccaccagcatggagtaaaactgttgagtatgtttttactggt
atttatacccttgaggcaacaatcaaagtgttgtctagaggtttctgtgttggatctttt
acattccttcgagatccatggaactggctggatttcatggtgatcagcatggcatacgtc
actgagtttgttgacctcggcaatgtgtcagccctccggacgtttcgtgtacttcgagcc
ctaaaaacaattactgtgattcctggtttgaaaaccatcgtggccgctttgatccagtca
gtgaagaaaatggtggacgtcatggttctgaccgtctttgctcttgcggtttttgcccta
gttggccttcaactttttatggggaatctgcgtcagaaatgcgtgcgatggcccgtcccc
tcaaatgaaacagacttttttaacaacacctccatatttaatgacactgtgtcctttaat
gacaccatgtccttcaacgacaccatggggttcaacgatacagcatatttaaatagtacc
ttcaatttcattgaatatatcgaaaacccagataatcagtattatgtggaaggcagcctc
gatgctcttatatgtggaaacagttctgatgctggaaagtgtccagaaggatacacatgc
atgaaggctggggataaccccaactatggctacaccagctttgactcttttggctggtcc
ttcctagccctcttcagactcatgacccaggactactgggagaaccttttccagctgatc
ctacgggcggctggaaagacatacatgctgttctttgtggtgattatctttctgggctcc
ttctacctcattaacctgatcctggctgtggtagccatggcttatgaagaacagaatcag
gcaacccagcgagaggccattgagaaagaggaggagttccagcgactactagagcaactc
aagaatcaagaacgggcccaacttcttgggagccaagccactctaaccagtaagaagtcg
ctcagtcattgcacagcgtctgagttggcagatgatgaacagagcctcgaacctgacgaa
gttgtcaaggattgtaacgggagagtcattcccaagctactggtcagatcgccgaccatg
gtgcagcctgctgccgattatgaactcagagagaagtcattaggctccgtgcacagcatg
tttcatctggaccaaccaggaccgagaacgagatctgctagcgctgtgtctgtgctcact
gctaaggaaggtaaattggaggaggctcagaggccgtgtccacctgggtggtataggttt
gccgacaggttcctgaagtgggactgctgcgagaggtgggtggtcattaaaaagtggatg
cactttgtggtgatggaccctttcgtcgacctggccatcaccatctgcatcgtgctcaac
accctcttcatggccatggagcactatcccatgaccccagagtttgactacatgctctca
gtggggaatctggttttcactgggatcttcacatcagaaatggtctttaagctccttgcc
atggacccctactactactttcaagttggctggaacatttttgacagcatcattgtcacc
ctcagtttggtggagttggggctggcgaatgtccagggcctgtccgtcctcaggtccttc
cgtttgcttcgtgtcttcaaactagccaagtcctggcccacgctcaacatgctgatcaaa
atcatcggtaactcagtaggagctttaggaaacctgactttggtgctggccatcatcgtc
ttcatcttcgctgtggtgggcatgcagctctttggcaagaactacaaggaatgtgtgtgc
aagatctcctcagattgcgagttgccacgctggcacatgcacgacttcttccactctttc
ctcattgttttccgcatcctgtgcggggagtggatagagaacatgtggaactgcatggag
gtggccgggacgggaatgtgtttagtggtcttcatgatggtgatggtcattggaaatcta
gtggttttgaacctcttcctggccctgctgctcagctcgttcagtggagacaacctctcg
gcaggagacgaggacggcgagctaaacaacctccagattgcaattggcaggatcacatgg
ggaattaactggtttaaagcgttcctcattcgaactatcctgcagatgttcgaaggaaag
cctcaggagtccgaggagggccctggggatgacgaggaccctaaaacggagggaattgaa
atgaaccacttggaagacagtcagaacttcaaaatgacagacgggatttctaattgtttg
gttgaatgccggccctctggatttattgtggatggggagctcattctcgatgtgccaatt
gcccagggggagtcagactttgaaaacctgggtgaggatgatgaggatgaagatgatgct
gatgacagtactgactcagacgacgatggggattcatcagtgtgcagcacagtggactac
caaccacctgagcctgaaccagaagaagtagaagaagaggagcctgaaccagtggaacca
gaagcctgcttcaccgacgactgtttcaggcggatgccgtgtctcgttgtggacataacc
aaagacagaggcaagaaatggtggaacctccgcagggcttgctttactattgtggagcac
gactggtttgaaaccttcataatattcatgatccttctcagcagtggagctctggcattt
gaagacatacacatagaaagacgccgaaccatcaaaactattctggagtattctgacaaa
gttttctcctacgtcttcgtcatcgagatgctccttaaatgggtcgcatatggctacaag
acgtacttcaccaacgcttggtgttggttagactttttcattgtagatatctccctgatt
agtttagctgccaactggatgggctactctgaacttggaccaattaaatccctccgaact
ctaagggcattgaggcctcttcgagcactgtcaagatttgaagggatgagggtggtagtc
aacgctcttatcggagcgattccctcaatcttcaacgtgctgctggtgtgtctgatcttc
tggctcatcttcagcattatgggagttaacctgtttgctggcaagttctaccgctgcatc
aacaccaccacggaggagcttttcgagatgagtgtggtcaacaaccggagcgactgcatg
gccatcatggaagccacacaggacgcccgctgggtcaacgtcaaagtcaactatgacaat
gttgcaacaggctacttgtccctgcttcaagtggcaacttttaaaggttggatggacatc
atgtatgctgctgttgactcaagagaggtcgaggaacaaccttcctacgagatcaacctc
tacatgtacatatactttgtcatcttcatcatctttggctcttttttcacgcttaacctt
ttcattggtgtcattattgataatttcaaccaacaaaagaaaaagtttggagataaagac
atctttatgactgaggaacaaaaaaaatactacgaggccatgaagaaacttggttccaag
aagccacagaagccaattccacggccaacgaacctaatccagggtatggtgtttgacttc
atcagtcagcagttctttgacatcttcatcatggtacttatctgcctcaatatggtgacc
atgatggtggagacggacaaccagagtccagaaaaggaggattttctctttaaagtcaat
gtggctttcattatagtcttcaccggagagtgtgtgttgaagctatgtgccctgcgacaa
tacttcttcaccaatccgtggaatgtttttgattttgttgtcgtcatcttgtcaatagct
ggtacaatgctctcagacatcattgagaagtactttgtgtcaccaaccttgttcagagtg
atcagactggccagaataggcaggattctacgtctcattaaaggagctaaaggcattcgg
acccttctcttcgctctactgatgtcacttcccgctctatttaatatcggcctcctgctc
ttcctcatcatgttcatcttctccatatttggcatgtcaaactttgcttacatcaaaaag
gaggctggaattgatgatatttttaattttgagacgtttggcggtagcattatctgcttg
tttcagattacgacgtccgctgggtgggattcacttttacttccgatgctgaacagggaa
gccccagactgcgatccaacctttgataatccaggcacggatgtaaagggtaactgcggc
agcccgggcttgggcatgatgttcttctgcacctacatcatcatctcatttttagtggtg
gtcaacatgtatatcgccatcatcttagaaaacttcaacgtggcgcaggaggagagtggt
gacgccctctgtgaggacgactttgagatgtttaatgagacttgggagaagtttgacata
gatggaacccagttcattaagtacagccagctctctgatttttgtgatgccctacaggag
ccactgaaggtggccaagcccaaccggcatcgcttgattgatatggacctacccctggtc
attggggacaggatccactgcctggatgtcttgatggcggtcacgcagatggttttggga
gacacggtggagatggcggcaatgcgattgagcattgaggctaaatttatcctgagcaac
cccaccacagactcatttgcgccgattactacaactgtgcgccacaaagaagaggagtgg
gctgctgtggtaattcagaaggcttaccgccaccacctgctgaaacgctgcatacgccac
gctgctttcatgcaccactctaagaagacggagagaaaagagacagatggagatccgccg
gaaaaagaggggctgcttgcacgaaagatgggtgtgctttatggtagcaatttggaactc
gcagaggagatggagcagactgcgttagaacttctcgtaagccaacagcctctttatccc
gagacattgtcacattacacagaggccgaagctggtccagaacctcctgagccaaatatc
atggttgtacctgtagaaattactaatgaggttttattacattctgcccccaatccatac
ctcttcgccctacaggcaaatctgagagagtcgattgtatag
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