Scomber scombrus (Atlantic mackerel): 134004258
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Entry
134004258 CDS
T10651
Symbol
irf5
Name
(RefSeq) interferon regulatory factor 5
KO
K09446
interferon regulatory factor 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
134004258 (irf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
134004258 (irf5)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
134004258 (irf5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
134004258
NCBI-ProteinID:
XP_062299461
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All DBs
Position
22:complement(24323148..24331803)
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AA seq
446 aa
AA seq
DB search
MSMQPRRIRLKPWLLAQVNSTRYPGLQWISSDQRLFQIPWRHATRHLPTSEEENTIFKAW
ALETGKYQEGVDEPDPAKWKANLRCALNKSREFQLKYDGTKDTPLQPYKIYEVCEPHTHT
DAAEDDEDEMPNLMDLTLNPTISDPPGFTSFPAHSDVNRFSSNGTFGPVVPVPLTSDLPQ
QDFQPQGASVPMEAGTMSGVQNQSCKYDLLNSVPLTDLDLKIQYRGRTTGSLTVSNPQGC
RLYYGHLEPTPEQVDLFGPVDLQQVRFPGTTELQNQKQQLYTNALLDVMDRGLILEIVEQ
DIYVVRLCQCKVFWSGPGVPDQGPPNPIEREKKIRVFSLNDFLQGLILFQKGEAPKPPPF
EVHFCFGEDWPDKKPREKKLIMVQVVPVVARILTEMFSGELNWSTDSIRLQISHPDVKDH
TVEQFKELQRLLQSQNIQGPWTPNGL
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgcagccccggaggatccggctgaagccttggcttctggctcaggtgaacagc
accaggtatcctggtctacagtggatcagctcggaccagagactcttccagattccctgg
agacacgcgacccgtcacctgccaacgtctgaggaggagaacaccatctttaaggcctgg
gctctggagacaggtaaatatcaggaaggtgtggatgagcctgatccagctaagtggaaa
gcgaaccttcgctgcgctctgaacaagagtcgagagtttcagctgaaatacgacggaacc
aaagatactccgctgcaaccctacaagatctacgaggtctgtgagccgcacacacacaca
gatgctgccgaagacgatgaagacgagatgccgaatctgatggatctgacgctcaacccc
accatcagcgacccccccggcttcacctccttcccggctcacagtgacgtgaaccggttc
agctccaacgggaccttcggacccgtcgtcccggttcctctgacctctgacctccctcag
caggacttccagcctcagggagcctcggtcccgatggaagccgggaccatgagcggggtc
cagaaccagtcctgcaagtacgacctgctgaacagcgtcccgttaacagatctggacctg
aagatccagtaccgcggccggaccacgggctctctgaccgtcagtaaccctcagggctgc
cggctctactacggacacctggagccgacccccgagcaggtggacctgttcggacccgtg
gacctgcagcaggtccggtttccggggacgacggagctccagaaccagaagcagcagctg
tacaccaacgcgctgctggacgtgatggaccgcggcctgatcctggagatcgtggagcag
gacatctacgtggtccgcctctgtcagtgcaaagtgttctggtccggacccggcgtgccc
gatcagggtcctcccaatcccatagagagggagaagaagatccgagtgttcagcctgaac
gacttcctgcaaggactgatcctgttccagaagggagaagcgccgaagcctccgcccttt
gaggtccacttctgtttcggggaggactggcccgacaagaaacccagagagaagaagctg
atcatggtgcaggtggttcctgtggtggctcggatcctgactgagatgttctctggagaa
ctcaactggtccaccgacagcatccggctgcagatctctcacccggatgtcaaggaccac
acggtggagcagttcaaggagctgcagaggctcctgcagagtcagaacatccaggggccc
tggacccccaacggactctga
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